Carya illinoinensis (pecan): 122291791
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Entry
122291791 CDS
T08745
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03030
DNA replication
cill03410
Base excision repair
cill03420
Nucleotide excision repair
cill03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122291791
03410 Base excision repair
122291791
03420 Nucleotide excision repair
122291791
03430 Mismatch repair
122291791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cill03032
]
122291791
03400 DNA repair and recombination proteins [BR:
cill03400
]
122291791
DNA replication proteins [BR:
cill03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122291791
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122291791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_lid_RFC1
AAA_22
AAA_30
AAA_19
RCF1-5-like_lid
PTCB-BRCT
BRCT_2
Rad17
nSTAND3
AAA_assoc_2
Gp44_lid
AAA_14
AAA_5
AAA_16
RuvB_N
Sigma54_activ_2
Zeta_toxin
NPHP3_N
AAA_18
NTPase_1
TsaE
AAA_24
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
122291791
NCBI-ProteinID:
XP_042955701
LinkDB
All DBs
Position
13:complement(22272004..22302567)
Genome browser
AA seq
958 aa
AA seq
DB search
MSDIRKWFMKSHVKGNGGELKPTNPAPSHSETLVQGGQESSGRRKTSKYFATDKQKPEDE
EETKELPAKRKTQKDSIESSKPTPPKKARNVEDDDDDFLLPSSRKNLVDVTPGKKLKSGL
GRGISRKPVDDEESDEEDDKDTETQKSGGRGRGRRGSSAAPAGGRGRGGGRGGFMNFGER
KDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYL
LCDEDIGGRKSAKAKELGTALLAEDGLFDMIRASKPAKAPAQEESKRPVCKAAPLPKKSP
QKTEANKDSVSNSMEMKASRGLTPGASPAKRKNQTVEKNTLTWPEKYRPKIPNEIVGNQS
LVKQLHDWLAHWKEQFLDTGTNKKGKKQNDSGAKKAVLLSGTPGIGKTTSAKLVCQMLNF
QAIEVNASDSRGKADAKIEKGIGGSNANSIKELVSNEALSVNMDRSKHPKTVLIMDEVDG
MSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLM
QIANAEGLQVNEIAVEELAERVNGDMRMALNQLQYMSLSMSVIKYDDIRQRLLSSAKDED
ISPFTAVDKLFGFNAGKLRMDERMDLSMSDPDLVPLLIQENYMNYRPSSVGKDDDGIKRM
NLIARAAESIGDGDIINVQIRRYRQWQLSQSGSLASSIIPAALLHGQRETLELGERNFNR
FGGWLGKNSTMGKNRRLLEDLHVHLLASRESSSGREILRVEYLTLLLKQLTEPLRQLHKD
EAVQKVVEFMNIYSITQEDFDTIVELSKFRGHPNPLDGIQPAVKAALTKAYKEGSKSRMV
RAADLVMLPGMRKAPKKRIAAMLEPSDDGFADVNADTLAENEEENSSDTEDLDSTANGEK
LQLELQSLNSKGVQVELDLKGTGNSGAKKTPVGRGKGGSGSTEKKGGRGAGAGAKRKR
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatataaggaagtggttcatgaaatcccatgtcaagggcaatggtggggaattg
aagcctacaaatcctgccccaagccattcggagacgctggtacaaggaggccaggaaagt
tcaggcaggaggaaaactagcaagtattttgcaactgacaaacaaaagccagaagatgaa
gaggaaacaaaggaacttccagcaaaaagaaagactcaaaaggatagcattgaatcatcg
aaacccactccccctaaaaaagctcgtaatgttgaagatgacgatgacgactttctcttg
cctagttcaaggaagaatttggttgatgtgactcctggcaagaagctgaagagtggattg
ggtaggggaatttcacggaaacctgtggatgatgaagaaagtgatgaggaagatgataaa
gatactgaaactcaaaagtctggcggaaggggtcgtggtagaagaggttcatcagcagca
ccggctggtggaagaggcagaggtggcggacggggtggatttatgaactttggagaaagg
aaagatcctcctcataaaggagaaaaggaagtccccgagggtgctcccaattgcttagct
ggtttaacttttgtaattagtggaacacttgacagtctggagcgtgaagaagctgaagat
ttgattaaaagacatggtggtcgtgtcactggatccgtcagcaagaaaacaaattatctt
ttatgcgatgaagatattggaggacggaagtctgctaaagccaaagagctgggtaccgca
ttgcttgctgaggatgggttgtttgatatgatccgtgcatcaaaacctgctaaagcacct
gcacaagaagaatcaaagagaccagtatgtaaggctgcacctttaccaaagaaaagtcca
cagaaaacagaagcaaacaaagacagcgtcagcaattccatggaaatgaaagccagcaga
ggattgaccccaggggcatctccggctaagcgaaaaaatcaaactgttgagaaaaatact
ttgacatggccagaaaagtataggccaaagatcccaaatgagattgttggaaatcagtcg
ctggttaagcagcttcatgactggttggcacattggaaggagcaatttcttgatactgga
actaataaaaagggcaaaaaacaaaatgattctggtgccaaaaaagctgtcctcttgagt
ggaacacctggcattggaaaaacaacttcagcaaagttggtctgtcagatgctcaatttt
caggcaatagaggtaaatgctagtgacagtcgtgggaaggctgatgccaaaattgaaaaa
ggaattggtggaagcaatgcaaattctataaaggaacttgtcagcaatgaggccctgagt
gttaacatggatcgttcaaagcatccaaaaactgtactgattatggatgaggttgatggg
atgtctgctggagataggggtgggattgctgaccttattgctagcatcaaaatttccaaa
attccaattatctgcatttgcaatgaccgatacagtcagaaattgaaaagtcttgttaac
tactgtttgcttcttagctttcggaaacctacaaaacaacagatggcaaagaggttaatg
caaattgcaaatgcagaaggccttcaagttaatgaaattgctgttgaggaacttgcagaa
agagttaatggagatatgagaatggcactaaaccagttgcagtacatgagcctctccatg
tcggtcattaaatatgatgacattaggcagcgtcttcttagtagtgcaaaggatgaagat
atttcaccattcactgccgttgacaagctgtttggttttaatgcggggaaattgaggatg
gatgagcggatggacctgagcatgagtgatcctgatctagtccctcttcttattcaggaa
aattacatgaattataggccaagttcagttggtaaggatgacgatggaatcaaacgaatg
aacttgattgcccgtgctgctgagtctattggtgatggggatataatcaatgtacagatt
cgacgatatcgacaatggcaactgtctcaaagtggttcccttgcatcatcaataattcct
gctgcattgttgcatggacagagggaaacacttgaattgggtgagaggaatttcaacaga
tttggggggtggctgggaaagaattcaacaatgggaaaaaaccggaggcttttagaggat
ttgcatgttcatcttcttgcttctcgtgaatctagttcggggagggaaatcctacgagta
gaataccttactcttctgcttaaacagttgactgagccactgcgacagctgcataaggat
gaagccgttcaaaaggttgttgagtttatgaacatttactcaataacccaggaggatttt
gatactattgtggagctatcaaaatttcggggacatccaaatccactggatggtatacag
cctgctgtgaaagctgctctcaccaaggcttacaaagaaggaagcaaatcaagaatggta
cgagctgctgatttggttatgcttcctggaatgagaaaagctcctaaaaagcgaattgca
gcaatgctagagccatctgatgatggatttgctgatgtcaatgctgacacattggcagaa
aatgaagaagaaaactcttcggatacagaggatttagacagtactgccaatggtgagaaa
ttgcagttggaacttcaaagtttgaattccaaaggagtgcaagtagaattggatctgaag
ggcacaggaaactcaggtgctaagaaaacaccagttggcagaggaaaaggtggttctgga
tctacagaaaagaaaggtgggcgaggtgcaggggctggtgccaagagaaagagatga
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