Carya illinoinensis (pecan): 122291795
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Entry
122291795 CDS
T08745
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03013
Nucleocytoplasmic transport
cill03015
mRNA surveillance pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122291795
09122 Translation
03013 Nucleocytoplasmic transport
122291795
03015 mRNA surveillance pathway
122291795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122291795
03041 Spliceosome [BR:
cill03041
]
122291795
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
122291795
Spliceosome [BR:
cill03041
]
Common components
Common spliceosomal components
Cap binding complex
122291795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
TPR_MLP1_2
DUF5798
CCDC39
Motif
Other DBs
NCBI-GeneID:
122291795
NCBI-ProteinID:
XP_042955706
LinkDB
All DBs
Position
13:30033952..30055321
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AA seq
864 aa
AA seq
DB search
MSSWKNLLLRIGDKSHEYGASTDFKDHIETCFSSLRRELEHSEKDILDFLVQCVEQLPHK
IPLYGTLVGLMNLENEDFVRKLVENTQTNLQDALDSGNCNRIRILMRFLTVLMCSKVLQP
SSLVVAFETLLSSAATTVDEEKGNPSWQACADFYITCILSCLPWGGAELVEQVPEEIERV
MVGVEAYLSIRRHASDRGLSFFEDDDEAKNGLGEKDFLEDLWSRIQDLSNNGWKLDSVPR
PHLSFEAQLVSGKSHEFGPISCPEQPHSPSTLSGITHGKQRHEAELKYPQRIRRLNIFPA
SKAEDLQPIDWFIVEEYLLDVLFFFNGCRKECAAFMVGLPVPFRYEYLMAETIFSQLLLL
PQPPFRPMYYTLVIIDLCKALPGAFPAVVAGAVRALFEKIADLDMECRTRLILWFSHHLS
NFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSVENAPGLEELLPPK
GGPNFRFSVDGDTERTEQHALSVDLSNMVKGRAAAREIISWIEESLFPVHGLEVTLKVVL
QTFLDIGSKSFTHLITVLERYGQVIAKICPDQDKQVMLIDEVGYYWKNNAQMAAIAIDRM
MGYRLISNLAIVRWVFSPENIEQFHTSDHPWEVLRNTVSKTYNRISDLRKEISSLQNGIV
STEEAATKAKAELEAAEAKLTLVDGEPVLGENPMRLNRLKMRAEKAKEEEVSIRESLEAK
EALLARAIDENEALFVALYKNFSNVLTERLPDASRAGTLWELKSVRADSMSVDLEEPSAM
EVDNENERQQKSQSNGGRTSSDGYNIGEKEQWCLSTLGYVKAFSRQYASEIWLYIEKLDA
EVLTENVHPLFRKAVYCGLRRPIN
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgagcagttggaagaatcttctattacgaattggcgacaagtctcatgagtacggcgcc
tctaccgacttcaaagaccacattgaaacatgttttagttcacttcggagagagctggaa
cactccgagaaagatattttggatttccttgttcaatgtgttgaacaattgcctcacaag
attcctttgtatgggacattggttggcttgatgaacttggaaaacgaagactttgttagg
aaattagttgagaatactcaaactaatcttcaggatgcccttgattctggaaattgcaac
agaattcgtattttgatgcggtttctgactgtgttgatgtgtagtaaagttctccaaccc
agttctctagttgttgcctttgaaacgctgttatcatcagctgccacaacagtggatgag
gagaagggaaatccctcttggcaagcatgtgcagacttctacattacttgtattttatcc
tgtctcccgtggggaggagctgaactggtggagcaagttcctgaggagattgagagagtc
atggttggtgtagaagcttatttgagcatcagaaggcatgcttctgaccgtggcttatcg
tttttcgaagatgatgatgaagctaagaatggacttggtgaaaaggatttcttggaagat
ttgtggagtcggatacaagatttatccaacaatggatggaaacttgatagtgttcctagg
cctcatctttcatttgaagctcaactggtttctggtaagtctcatgagtttgggcccatt
agctgccctgagcaaccccattcaccttcaacactttctgggataactcatggtaaacag
aggcacgaagcagagctaaagtatcctcaaagaatacgcagactgaatatatttcctgca
agtaaagctgaggacctacaacctattgattggttcattgtggaggagtatctgctagat
gtgcttttcttcttcaacggctgtcggaaggaatgtgctgcattcatggttggcctccct
gtgcctttcagatatgagtatcttatggcggagacaattttctcccagttactcttgcta
ccacaacctccattcaggccaatgtactacaccttggttattattgacctctgtaaggct
cttcctggggcctttcctgcagttgtggcgggtgcagttcgtgctctttttgagaaaata
gctgatttagatatggaatgtcggacgcgactcatcctttggttttcacaccacctgtca
aacttccaattcatctggccatgggaagagtgggcttacgtcttggaccttccaaaatgg
gccccacaacgtgtgtttgtccaggaagttttggagagagaagtccgtttgtcatactgg
gacaaggtgaaacagagcgttgagaatgcacctggtttagaagagttgcttcccccaaag
ggtggaccaaacttcagattcagtgtggatggtgatacagaaagaactgaacaacatgca
ctttctgtggatcttagtaacatggtgaaaggaagggctgctgcccgtgaaataatttca
tggattgaagaaagtttgtttccagttcatggtctggaagtaactctcaaagtggttctg
caaacttttcttgacattggatcgaaaagttttacacatttaatcactgtcttagaaaga
tatggtcaagtaatagcaaagatatgtcctgatcaagataagcaagtcatgcttatagat
gaggtgggttattactggaagaataatgcccaaatggcagctatagcaattgataggatg
atgggataccggcttatatctaatttggctattgtgagatgggtcttctctccggaaaat
attgagcaatttcatacgtctgatcatccttgggaggttctaagaaatacggttagcaag
acatataaccgtatctctgatcttaggaaagagatatcgtctcttcagaatggtattgta
tcaactgaagaagctgcaacaaaggcaaaagccgagttagaagctgccgaagcaaagctt
acacttgtggatggtgaacctgttcttggtgaaaatcctatgagattgaatcgtttgaaa
atgcgtgctgaaaaggcaaaagaggaagaggtgtcaatacgtgagtctttggaggcaaag
gaggcccttcttgctcgggccattgatgaaaatgaggcattgttcgttgctttgtacaaa
aacttctctaatgtattgacggaacgcctgcctgatgcatctagagctggaacattgtgg
gaattaaagtctgttcgtgcagattcaatgtcggttgaccttgaagaaccatcagcaatg
gaggtggacaatgagaatgaaagacaacaaaaaagtcaatcaaatggtggaaggaccagt
agtgatggctataacataggtgaaaaagagcagtggtgtttgtcgactttgggctatgtc
aaggccttctcgagacaatatgcctctgagatatggctatacattgagaagttggatgcg
gaggtattaaccgagaatgtgcatcctctctttcgaaaagccgtttattgcggacttcgt
cggccaatcaattag
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