Carya illinoinensis (pecan): 122291893
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Entry
122291893 CDS
T08745
Name
(RefSeq) uncharacterized protein LOC122291893 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122291893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cill03000
]
122291893
03019 Messenger RNA biogenesis [BR:
cill03019
]
122291893
04121 Ubiquitin system [BR:
cill04121
]
122291893
Enzymes [BR:
cill01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122291893
Transcription factors [BR:
cill03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
122291893
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122291893
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122291893
Ubiquitin system [BR:
cill04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122291893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-RING_2
FYVE
zf-UDP
Motif
Other DBs
NCBI-GeneID:
122291893
NCBI-ProteinID:
XP_042955862
LinkDB
All DBs
Position
13:complement(12456107..12465816)
Genome browser
AA seq
1105 aa
AA seq
DB search
MDSDAEQNRKKKPSKHSSTLSLSSIRFSCGSFFLYRALLTQSHPRRFVPLLDPSTVLFQV
IMSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHILEMAEKVETEGRCPACRAP
YDKEKIVGMAANCERMVAEISLDRKKCQKVKSKPSEGRKQLSSVRVIQRNLVYIVGLPLN
LADEDLLQNREYFGQYGKVLKVSMSRTAAGVIQQFPNSTCSVYITYSKEEEAIRCIQNVH
GFILDGRSLRACFGTTKYCHAWLRNVPCSNSDCLYLHEIGPQEDSFSKDEIISAYTRSRV
QQITGATNNLQRRSGNLLPPPADEYYINSSTSTGKPIVKTTSQNIASVVRSSPPNGSSGR
SIALPAAASWGMRATNGHLPASSISSTNGPSKQKPDTIASTLAFPSAVTGLAQTSTLNID
VGKRPTPNEDIQTMNQTSKESLNPLKQHIIMDSPTNLSKKLATPDGTCAFLTLSSDFACP
PASADNDRGISLPPEITNSAYSEESCGSTTEKLGVESYRQIQNLCSDMSLISIDRIARDE
HAVAVRPNDSLFDPILIKEPGNQGLHQDYAEQNREPLISTVGKATAMNGVYVSREQYDCK
SDSRTRVIQDTSPAVEDDILSFESQRLKDPEVGSRSTYLTNLGNSFHVSRSHPLQHDEDY
GALSLNADRPISVDNRVNDGSLLHSSSISVISSAFPENLVNNASGLDMTLEHSFLHPNDN
KGKQMGSFLGVVTNNEGNAPGVDKGESSIISNILSMDGDTWGESLASPQNLANLFRESDK
QSGSCIISGSWKAQNNNQSRFSFARHEESRSQPFDVQKSFDAFEQLPMSRPFSQYGGGRD
LYLDKQGIGNGFSSRNFDESENLANIHPIFSPNKLSGVSRAQISAPPGFSVPSRAPPPGF
SSSKRMDQAFDPMTGNHLLDTSSLLRNSYQTMPTGNIFNTGDIEFMDPAILAVGEGRLQG
GLNNSGLDMRSTFPPQLSAFESDSRFQVLMQSSLSPQQNRRFADIDDNFSHRSNSYGLST
RLADQSQASNLSPFAAQLSLQQSRNALMSNGHWDSWNEVQGGNGLGMTELLRNDRLGYNK
FYTGYEDSKYRMPSSGDLYNRTFGM
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggacagcgacgcagagcagaacagaaagaaaaagccatccaaacacagcagcactctc
tctctctcttcgatacgcttctcttgtggttccttctttctctatcgtgctcttcttaca
caatctcatcctcgcagattcgttcctcttctcgatccctcaactgtattgtttcaggta
atcatgagtgatgagggagaaaagacttgtcctctctgcgcagaagagatggatttgact
gatcagcagttgaagccatgtaaatgtggttatgagatatgtgtttggtgctggcatcac
atcctggagatggctgaaaaggttgagacggaggggcggtgtcctgcctgtcgtgcccct
tatgacaaggaaaagattgttgggatggctgcaaactgtgagaggatggtggctgaaatc
agtctggatagaaaaaagtgccagaaggttaaatccaaaccatccgagggacggaagcaa
ctcagcagtgtccgtgtgattcaacggaaccttgtatacatagtcggcttgcctctaaat
ctggctgacgaagatcttctccaaaaccgtgaatattttgggcagtatggcaaggttcta
aaagtgtccatgtctcggacagcagctggtgtaattcaacaatttccaaacagtacatgt
agtgtatatattacctattcaaaagaggaggaagcgattcgttgtattcaaaatgtacat
gggtttattttggatggtagatccttaagggcttgctttggaaccacaaagtattgtcat
gcttggctaagaaatgtgccttgtagcaattctgattgtctctatttgcatgagattggt
ccccaagaggatagcttctctaaagatgaaataatttcagcatatacgaggagtcgagtt
caacaaattactggtgccacaaataatttgcagcgacgttctgggaatttgttaccacca
ccagcagatgaatattatattaacagttccacttcaactggaaagcccattgtcaaaact
actagtcagaatattgcgagtgttgttagaagttctccaccaaatggaagttctggtaga
tccatagctcttcctgctgcagcctcatggggaatgcgtgctactaatggccatctgcca
gcttccagtatatcaagtacaaacggaccttctaagcagaaacctgacacaattgctagt
acattggcatttccatcggcagttacaggcttagctcagacttccacattaaatattgat
gttggcaagaggccaacaccgaatgaagatattcaaactatgaaccaaacaagtaaggaa
tcattaaaccctttgaaacagcatataattatggattctccaaccaacctgtccaagaaa
cttgccacaccggatggaacttgtgcttttttaacattgagcagtgacttcgcttgtcca
ccagcatctgcggacaatgatagaggtattagtctgccaccagagattacaaattctgct
tatagtgaggagtcctgcggttctaccactgaaaaattaggggttgaaagttatagacag
atccagaacttatgctctgatatgtcgttaataagtattgatagaattgccagagatgaa
catgctgttgcagtcagacctaatgattcactttttgatccgatcttgattaaagaacct
ggaaatcaagggttgcatcaagattatgctgagcaaaatagagaacctttaatctcaaca
gttggtaaagctactgccatgaatggggtgtatgtatcaagagaacaatatgactgtaaa
tcagattcacgtactcgagtaatacaagatacatctcctgcagttgaagatgatatacta
tcttttgagagtcaaagactcaaggatccagaagttggaagcaggtctacttatctaacc
aatttgggtaattcattccatgtttcaaggtctcatcctcttcagcatgatgaggattat
ggtgcacttagtttaaatgccgatcgtccgatatctgtggataatagagttaacgatggt
tcgcttctacattcatctagcatttcagtgatttctagtgctttccctgagaacttggtc
aacaatgcctctggtttggatatgaccttggagcattcctttttgcatccaaatgacaat
aaagggaagcaaatgggaagtttcctgggtgttgtgacgaataatgagggcaatgctcct
ggtgtagataaaggagagagcagtataatctcaaatatattatcaatggatggtgacaca
tggggtgagtcattggcatcccctcagaatctggctaatttgtttagggaaagtgataaa
cagtctggttcttgcataatatcaggttcctggaaagcacaaaacaacaatcagtccagg
ttttcttttgcaaggcatgaggaatcgagaagtcaaccttttgatgtacagaaatctttc
gatgcctttgagcaattgccaatgagccgaccattcagccagtatggtggtggaagagat
ttgtatttggacaaacaagggattggcaatggcttctcttcccgaaattttgacgaatct
gagaatcttgccaacattcatcccattttctctcctaataagctttctggtgtttctaga
gcacaaatttcagcccctcctggattctctgtgccaagcagggcaccgccaccaggtttt
tcctctagcaagagaatggaccaggcatttgaccccatgactgggaatcatttgcttgac
acatcctccttgttgagaaactcatatcagacgatgcccactggaaatatttttaatact
ggggatattgagtttatggatcctgcaattttggctgtgggtgaagggagactccaaggt
gggcttaacaattcaggcttagacatgagatcaactttccctccacaattaagtgccttt
gaaagtgactccagatttcaggtattgatgcaaagctcgctctccccgcagcagaacagg
agatttgctgacattgatgataatttttcacatcgtagcaattcttatggcctttctaca
aggcttgcggatcaatcacaagcgagcaacctatctccttttgctgcacagctgtccctc
caacagtctagaaatgcacttatgtctaatggccactgggacagttggaatgaagttcaa
ggtgggaatggtctgggtatgacagagctcctaagaaatgatagactgggttataataaa
ttttatactggctatgaagattcaaagtatcggatgccgagctctggtgatctctataac
aggacatttgggatgtga
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