KEGG   Carya illinoinensis (pecan): 122291904
Entry
122291904         CDS       T08745                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03018  RNA degradation
cill03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122291904
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122291904
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cill03019]
    122291904
   03041 Spliceosome [BR:cill03041]
    122291904
Messenger RNA biogenesis [BR:cill03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     122291904
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     122291904
Spliceosome [BR:cill03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    122291904
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 122291904
NCBI-ProteinID: XP_042955875
LinkDB
Position
13:412167..416712
AA seq 100 aa
MSGSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFTRDPDDPLK
TTDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA
NT seq 303 nt   +upstreamnt  +downstreamnt
atgtcgggaagcaggaaggaaacggttttggacttggcaaagtttgtggacaaaggtgtc
caagtcaagctcactggtggtagacaagtgactgggactctaaaaggatatgaccaatta
ctaaaccttgttctggacgaagcgatagagtttacaagagatcctgatgatccactgaag
actactgatcagaccaggcgtctaggccttatagtttgcaggggaaccgctgtaatgctt
gtgtcccccacagatggtactgatgagattgccaatcctttcgtccagccagatggggcc
tag

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