Carya illinoinensis (pecan): 122291959
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Entry
122291959 CDS
T08745
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122291959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122291959
Enzymes [BR:
cill01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122291959
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122291959
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RRM_PARN_C
AllH_N
Motif
Other DBs
NCBI-GeneID:
122291959
NCBI-ProteinID:
XP_042955965
LinkDB
All DBs
Position
13:complement(5719510..5723388)
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AA seq
634 aa
AA seq
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MAALPYLLQRRFLCTKTHQKWSVKQVTKSNFQETLSEIKTDIADSDFIAVSLQRTGSVSA
PWHRVLPFDLPDTAYSKAKRAAERFQLLQFAVCPFSIRSSKLLAHPYNFHLFPRDELKIG
MPSYSFSCQTSYLTSMAREGFDFNTCIYDEVLDLMVKYPIPSRRKVIFVTGISYLSRAQE
SEARVQIGNPMRITRVVKSSSNPTVADSVFIERIKSRVKHWRKSCKDSSTKLDEALVRSL
KKIVLGSEEYGSRPCMNIDVCSERQVELVLEMLEEFSDDLVPLIIPAKGGATQAVRVVLT
SSKDDMVLFQNELQDLKEERNKKVRGFREVIDLISASQRPVVSHNSLNDFTFIHSKFLAP
LPPNVDEFLWSLHSVFPHVINVQQLMKEIRPLRNVTNIPTAISYLKDHFFAPMDVEILQQ
DAVSERKIHGHDVLRISLLFAKLCSILQIAPNQADSKKLVPALEEYANILYPFSASPQES
TDGEIRIGTNNTRKVSCKHLVFLWGFKHGMTAGMLKSLIQGSHDIFSEEFDLRLVDRSCA
IVVFWKAGLSETFLNVMNSKEISGSLRELVSEGLRAASYGIYKKVCSLGIWEVDLAESLE
KALEESDGLQNTDSVANSLDVHWFSDSTINLDDL
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggcggctctgccttatttgctgcagagacgcttcctctgcaccaaaacccaccagaaa
tggagcgtcaaacaagtgacgaagtcgaacttccaggaaactctctcggagatcaagacc
gacatcgctgattccgactttattgccgtgtcgttgcagaggaccggctctgtgtccgcg
ccctggcaccgtgtccttccattcgacttgcccgacactgcttattctaaggccaagcgg
gcagccgagcgctttcagcttctccagttcgccgtctgccccttctccattaggtcttcc
aagctcctcgctcacccatataactttcatttgtttcctagggatgaactgaagataggg
atgccatcttatagtttttcatgtcaaacgtcatatttgacgtccatggctcgagaaggt
tttgattttaatacctgcatatatgatgaggtgcttgatttgatggtaaaatatcctata
cctagcagaagaaaggttatttttgtgacaggcatatcatacttatctagggcacaagag
tcagaagcaagagttcagatagggaatccaatgcgtatcactcgtgtggtgaaatcttct
tctaaccctactgttgcggattcagttttcattgagaggattaaatcacgggttaagcat
tggagaaaatcatgtaaagactcgagcacaaaattagatgaggctctagtgagatcccta
aaaaaaattgtcttagggagtgaagagtatggttcaagaccctgcatgaacatagatgtt
tgcagtgaacgtcaagttgagcttgtgctagagatgttggaagagttctctgatgacctt
gttcctttaataatcccagcaaagggtggagcaacccaggcagttcgtgttgttttgaca
agttcaaaagacgacatggttttatttcagaatgagcttcaagatctcaaagaggagcgg
aacaagaaagtccgtggttttcgagaggtgatcgacttgatttctgcctcacagagacct
gttgtctcccacaattctcttaatgatttcacatttattcattcgaagttccttgctcct
ttacctcctaatgtagacgagttcttgtggtccttgcactcggttttcccacatgtaatt
aatgtccagcaactgatgaaggaaattcgtcctttgagaaatgttaccaatatacccaca
gctatttcctacttaaaagatcatttctttgcacctatggatgttgaaattctgcagcaa
gatgctgtaagtgaacgcaagattcatggacatgatgttctaaggatttcccttctgttt
gcaaagctatgctccatcctgcaaattgctcccaaccaagctgatagcaaaaagttggtt
ccagccctcgaggagtatgcgaacattttgtatccattttctgcgagtcctcaggaatca
actgatggcgagattagaattgggacaaacaatacaagaaaagtgagctgtaagcatttg
gttttcttgtggggatttaagcatgggatgaccgctggaatgctgaaaagcttgatccaa
gggtcccatgatattttctcagaagaatttgatcttcgtttagtggataggagctgtgcc
attgttgttttctggaaagctggtttgtctgaaacttttctgaacgtaatgaatagcaaa
gagatttctgggtctttaagggagctggtttcggaaggcctaagagcagcatcttatgga
atctacaagaaggtttgtagtttgggaatatgggaggtagatttggcagagtccctagaa
aaagctttggaagagtctgacggccttcaaaatactgattctgtagcaaattcactggat
gtgcactggtttagtgactctaccattaacttggatgacctctga
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