Carya illinoinensis (pecan): 122292189
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Entry
122292189 CDS
T08745
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122292189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122292189
03009 Ribosome biogenesis [BR:
cill03009
]
122292189
04131 Membrane trafficking [BR:
cill04131
]
122292189
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cill04147
]
122292189
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
122292189
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
122292189
Membrane trafficking [BR:
cill04131
]
SNARE
SNARE associated proteins
Others
122292189
Autophagy
Aggrephagy
Other aggrephagy associated proteins
122292189
Exosome [BR:
cill04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
122292189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_22
AAA_33
TIP49
AAA_14
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
ATPase_2
AAA_28
AAA_18
Parvo_NS1
IstB_IS21
ABC_tran
AAA_7
NACHT
Viral_helicase1
NB-ARC
Vps4_C
AAA_24
TsaE
DUF815
Zeta_toxin
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
122292189
NCBI-ProteinID:
XP_042956361
LinkDB
All DBs
Position
13:complement(16807840..16815742)
Genome browser
AA seq
805 aa
AA seq
DB search
MANEPESSDLKSGKKDFSTAILERKKSPNRLVVDEAINDDNSVVALHPETMEKLQLFRGD
TILIKGKKRKDTICIALADDTCEVPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDSIEGVTGSLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCV
VSPDTEIFCEGEPVRREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERISKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDESIDAEILNSMAVTNEHFHTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKSCLRKSPVSKDVDLIALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRGREN
PEAMDEDGEDEVAEIKAAHFEESMKYARRSVSDADIRKYQVFAQTLQQSRGFGTEFRFSE
TQTGATGADPFTTSAGGADEDDLYS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggctaacgaacccgaatcctctgacttgaaatcagggaagaaggacttctcgacggcg
attctggagcggaaaaagtcgccaaaccggctagtcgttgacgaggcgatcaacgatgac
aactcggtagtggcgttgcacccagagaccatggagaagctccagctctttcgcggggat
acgattctcatcaagggcaagaaacgtaaggatacaatctgcattgctcttgctgatgac
acgtgtgaggttccaaagattagaatgaacaaggttgttagatcaaatctgagggttcgg
cttggagatgtagtatctgtgcaccagtgccctgatgtgaagtatgggaaacgtgtccac
atactgccgattgatgattctattgaaggggttactggtagtctgtttgatgcatacctg
aaaccttatttcttggaggcttatcgtcctgttaggaagggagatttattccttgtcaga
ggaggtatgagaagtgtggagttcaaggtcattgaaactgacccaggggagtattgtgtg
gtttccccagacaccgaaatcttctgtgagggggaaccggtcagaagggaggatgaggat
aggttggatgaagttggttatgatgatgtgggtggtgttcggaaacagatggctcagatt
cgtgagttagtggagctgccactaaggcatcctcagcttttcaaatcaattggtgtgaag
ccacccaaaggaattttgctttatggacccccgggatctggaaaaacattaatagcaagg
gctgttgctaatgagactggggcgttctttttctgtattaatgggccggagataatgtcc
aaattggctggagagagtgagagcaatctccggaaggcatttgaagaagctgagaagaat
gctccatctattattttcatcgatgagcttgattctattgctcctaagagggagaagaca
catggtgaagttgaaaggcgaattgtttcacaactgttgactcttatggatggactgaaa
tctcgggctcatgttatagttattggggctacaaatcgtccaaacagcattgacccagct
ttgagaaggtttggtcggtttgatagggaaatagacattggtgttcctgatgaagttggg
cgtcttgaagttcttcgtatccataccaagaacatgaagctctctgatgatgttgacttg
gaaagaatttcgaaagatacccatgggtatgttggtgctgatcttgcagctctctgtact
gaagccgcactgcagtgcattagagagaagatggatgtgattgacttggaagatgaatct
attgatgctgagatacttaacagcatggccgttaccaatgagcacttccacactgctctt
ggaacaagcaacccatctgctctgcgtgaaactgttgttgaagtgcctaatgtcagctgg
gaggacattggaggccttgagaatgttaagcgggagcttcaagagactgttcagtatcct
gtggagcacccagagaagttcgagaaattcggaatgtcaccttcaaaaggggtacttttc
tatggtcccccaggatgtgggaaaactctcttggccaaggcaattgcaaatgaatgtcaa
gcaaacttcatcagtattaagggccctgaactgctgacaatgtggtttggtgagagtgaa
gccaatgttcgagaaatttttgacaaggctcgacaatctgcaccatgtgtgcttttcttt
gatgagctcgactcgattgctactcagagaggaagcagcgttggggatgcaggtggtgct
gctgatcgagttctgaaccaactcctgactgagatggatggcatgtctgcaaaaaagact
gtcttcataattggagccaccaacaggcctgacataattgatcctgcacttctgaggcca
ggtcgtctcgaccaattaatttatattcctcttcctgatgaggattcgcgccatcaaatt
tttaaatcgtgcttgagaaaatcacctgtctcaaaagatgttgatttgatagcactggcc
aagtacactcaaggtttcagtggggctgacattacagagatatgccagcgggcatgcaag
tatgctataagagagaacatagaaaaggatatagagagagagagaaggggaagggagaat
cctgaggctatggacgaggatggggaggatgaggtggcagagatcaaagctgctcatttt
gaggagtccatgaagtatgctcggaggagtgtcagcgatgctgatatacgcaaataccag
gtttttgctcagacgttgcagcagtcaagaggttttggaactgaattcaggttctctgag
acccaaaccggggccacgggggcagatccattcaccacttcggctggtggagctgatgaa
gatgatttgtatagctag
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