Carya illinoinensis (pecan): 122292756
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Entry
122292756 CDS
T08745
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122292756
09123 Folding, sorting and degradation
03018 RNA degradation
122292756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122292756
03041 Spliceosome [BR:
cill03041
]
122292756
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122292756
mRNA degradation factors
5'-3' decay
Lsm complex
122292756
Spliceosome [BR:
cill03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
122292756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
122292756
NCBI-ProteinID:
XP_042957179
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All DBs
Position
13:31894988..31898996
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AA seq
99 aa
AA seq
DB search
MSSGGPGLESLVDQTISIITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVL
GLYIIRGDNISIVGELDEELDSSLDLSKLRAHPLKPVIH
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtggtggccctggacttgaatcacttgtagatcaaactatatcaattatcaca
aatgatggacgcaatatagtgggagttcttaaaggctttgaccaggctacaaatattatc
cttgatgaatctcacgaacgtgtctactccacaaaggaaggtgttcaacagcttgtgctg
ggtttgtacataataaggggtgacaacataagcattgttggggagctggacgaagagctt
gattctagtcttgatttatcaaaactgagggctcatccccttaagcctgttatccattga
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