Carya illinoinensis (pecan): 122292781
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Entry
122292781 CDS
T08745
Name
(RefSeq) protein DAMAGED DNA-BINDING 2
KO
K10140
DNA damage-binding protein 2
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03420
Nucleotide excision repair
cill04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122292781
09124 Replication and repair
03420 Nucleotide excision repair
122292781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cill04121
]
122292781
03400 DNA repair and recombination proteins [BR:
cill03400
]
122292781
Ubiquitin system [BR:
cill04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
122292781
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
122292781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EIPR1
WD40_Prp19
WD40_CDC20-Fz
WD40
Beta-prop_TEP1_2nd
Beta-prop_EML
WDR55
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_CAF1B_HIR1
WD_LRWD1
PQQ_3
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
Beta-prop_NUP159_NUP214
Beta-prop_IFT140_1st
PQQ
Motif
Other DBs
NCBI-GeneID:
122292781
NCBI-ProteinID:
XP_042957223
LinkDB
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Position
13:complement(8317925..8323748)
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AA seq
570 aa
AA seq
DB search
MAPQTRRTSFPKVVIERDSDSERSSSEDEEEGEEDEDNREEEEAERGENEEGEEEEALEN
KNRERKAEGLDAKKKGKAPITLSLKKVCKVCKKAGHEAGFKGATYIDCPMKPCFLCKMPG
HTTMTCPHRVATEHGVIPAPRRNTRNSLEYVFERQLRPDILPIKPTFVIPDQVNCAVIRY
HSRRVTCLEFHPTNNNILLSGDKKGQVGVWDFAKVHEKMVYGNVHSCIVNNMRFNSTKDD
SVYAASSDGTISCIDLETGISLSLMNLNPDGWQGPSNWRMLYGMDVHSEKGLVLVADNFG
FLYLVDTRSNNKIGEAVLIHKKGSKVVGLHCNPVQPDLLLSCGNDHFARIWDMRRMEAGS
SLYALAHKRVVNSAYFSPLSGSKILTTSQDNRLRIWDSIFGDLDSPSREIVHSHDFNRHL
TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDISTGRLVAEVMDPNITTISPV
NKLHPRDDVLATGSSRSLFIWRPKEKSEPVEQKDERRIIVCGRAEKKRSRKFGDESDDDS
DDGKFTSKGTKLKSNKPERNLTRCPSKVKR
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggccccacagaccagaagaacgtccttcccgaaagttgtcatagagagagactccgac
tctgaacgcagctcgtcagaagacgaagaagaaggagaagaagatgaagacaaccgagaa
gaagaagaagcggaaagaggggaaaacgaagaaggggaagaggaggaagccttggagaac
aaaaaccgagagagaaaggcagaaggtttggatgcgaagaagaaaggcaaagcgcccatt
actcttagtcttaagaaagtttgcaaagtttgcaaaaaggcaggtcatgaagcgggattc
aagggggctacttacatagactgccccatgaaaccttgctttttatgcaaaatgccgggc
cacactacaatgacatgcccgcatcgggtggctactgagcatggggtcatccctgcaccc
cgcagaaatacccgtaactcattggaatatgtctttgagcgccagctcagaccagacatt
cttccaatcaaaccaacattcgtaatcccagatcaggtgaattgtgcggttataagatat
cacagtagacgggtaacatgcttggagtttcatcctaccaacaataacatccttttgtct
ggagataagaaaggacaagttggagtctgggattttgctaaagtgcacgaaaagatggtt
tatggaaatgtacactcttgtatcgtgaataacatgagattcaactctacaaaggatgat
tcggtatatgctgcgtcctcagatggaaccattagttgcattgacttggagactggaatt
tcattatctctgatgaaccttaatcctgacgggtggcagggtccaagcaattggaggatg
ctctatggcatggatgtccactcagagaaaggccttgtgcttgttgctgataactttggt
tttctctacttagtggatactcgctctaacaacaaaattggggaagcagttttgatccat
aagaaaggaagcaaagttgttggactccactgcaatcctgttcagccagacctccttttg
agctgtggaaatgatcattttgctcgtatatgggatatgcgtcgaatggaagctggatct
tccctctatgctcttgcacacaaacgagttgttaactcagcatatttttctccattgtcg
ggcagcaaaatcttaactacatcacaagacaatcgccttcgtatatgggattctatattt
ggtgatttggactctccaagccgagaaattgtgcatagtcatgattttaatcgacattta
actcctttcagagctgaatgggatccaaaggatccatcagaatccctggcagttattggc
cgttacattagtgaaaattataatggagctgccttacatcctattgatttcatagacatc
agcacaggacggctagttgccgaggtcatggatccaaacatcacaactattagtccggtg
aacaagttacatccacgtgatgatgttttggcgactggtagttcgagatcactcttcata
tggaggcctaaggaaaagtccgagcctgtggaacagaaggatgaacggaggataattgtt
tgtggaagagctgagaagaagcggagtcgaaagtttggggatgaaagtgatgatgattct
gatgatggcaagttcacctccaagggtacgaagttaaagtccaataaacctgaacggaat
ttaacccgctgccctagtaaggtcaaacggtaa
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