Carya illinoinensis (pecan): 122292847
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Entry
122292847 CDS
T08745
Name
(RefSeq) structural maintenance of chromosomes protein 3
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cill03036
]
122292847
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cill00535
]
122292847
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
122292847
Meiosis-specific proteins
Cohesin complex and associated proteins
122292847
Proteoglycans [BR:
cill00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
122292847
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_15
AAA_23
Myosin_tail_1
ATG14
Motif
Other DBs
NCBI-GeneID:
122292847
NCBI-ProteinID:
XP_042957326
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Position
13:complement(21936244..21972996)
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AA seq
1204 aa
AA seq
DB search
MYIKQVIIEGFKSYREQIATEPFSSKINCVVGANGSGKTNFFHAIRFVLSDLFQNLRSED
RHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTE
VMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQ
ETGNKRKQIIQVVQYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDARQKLA
EVEEARNKVSETSAKMYNSVLDAHEKSKDLEETLKDLTKEVQGLIKEKEAVEKRRTETIK
KHTELELDVKDLQEKISGNNRAKEDAMRQLGTLQREIQDSMDELEKIRPFYENQVIMEKE
IAKGIMEREKQLSILYQKQGRATQFASKAARDKWLQKEIDDLNRVLSSNLAQEEKLQDEI
HRLDSELKERDVYIDARKTEIAAVESLISQSREGFSHYKVQRDKLQNERKSLWGKESELS
AEIDKLRTEVEKGEKSLDHATPGDVRRGLKTVKYICKEYDIRGVFGPIIELLDCDERFFT
AVEVTAGNSLFHVVVENDEISTKIIKHLNSLKGGRVTFIPLNRVRAPHVSYPQSSDVVPL
LKKLKFSSNYTPAFAQVFARTVICRDLDVATRVARSEGLDCITLEGDQVSKKGGMTGGFY
DHRRSKLKFMNIVVQNKKSINVKERELEEVRNMLQEIDQKITELVSEQQKTDAKRSHDKS
ELEQLKQDITNASKQKQLISKALENKEKSLADVRTQIDQLRASMAMKRAEMGTELIDHLT
PEEKDLLSRLNPEIADLKEKLIACKTDRLETESRKAELETNLTTNLKRRKQELEAIISSA
ETETLLGEAELKRQELSDAKLLVEDATQQLKRVSERIDEQTKQLRMKKDEKNKLKTLEDE
YERTLQDEAKELEQLLSKRNILLAKQEEYSKKIRELGPLSSDAFEMYKRRSIKELHKMLH
RCNEQLQQFSHVNKKALDQYVNFTEQREELQKRQAELDAGDEKIRELISVLDQRKDESIE
RTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHGDDDLDEDGPREADLEGRVEKYIGV
KVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAV
GNMIRRLADMANTQFITTTFRQELVKVSDKIYGVTHKNRVSRVNVVSKEDALDFIEHDQS
HNTD
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgtacatcaagcaggttataattgaaggttttaagagctacagagaacagattgcaact
gagcctttcagttctaaaattaattgtgttgttggtgccaatggatctggaaaaacgaat
tttttccatgcgattagatttgtacttagtgatctcttccagaacctgcgtagtgaagat
aggcatgccctgcttcatgaaggtgcaggacatcaagttttatctgcattcgtggagatt
gtgtttgacaattccgacaatcgcatcccggttgacaaggaggaagttcgcttgcgtcga
acaattggcttgaagaaggatgagtatttcttagatggaaagcacataacgaaaacggaa
gttatgaacttattggaaagtgctgggttctctcgctcaaacccttactatgttgtgcag
caaggaaagatagcatcattgacattgatgaaagactctgagagattggatttattaaag
gaaattggtggcactcgagtttatgaggagagacgacgtgaaagtttgaaaattatgcaa
gaaactggaaataaaagaaagcaaataattcaagttgttcagtacttggatgagagatta
aaggagctggatgaagagaaagaggaactgagaaaatatcagcagcttgacaagcagcgg
aaatctctagagtatactatttatgataaagaacttcatgatgcccgacaaaaactagca
gaggttgaagaggcacggaacaaagtttctgaaacatcagcaaagatgtataacagtgtg
ctggatgcccatgaaaagtctaaggacttggaggagacgttgaaagatctaacaaaagaa
gttcaaggtttaatcaaagagaaagaagcagtggaaaagcgacggactgaaacaataaag
aagcacacagaacttgagcttgatgtcaaagacctacaagaaaagatctctggaaataac
cgggctaaagaggatgctatgagacagctagggactctacagagagaaattcaggactca
atggatgagcttgaaaaaattcgtcccttttatgagaatcaagtcataatggaaaaggag
atagcaaaagggataatggagcgagaaaagcagcttagcattctttatcaaaaacaaggc
cgtgctacccagtttgcgagtaaagctgctcgtgataaatggcttcaaaaggaaattgac
gatcttaaccgggtgctttcttcaaacttggcgcaggaggaaaaacttcaggatgaaatt
catcggcttgacagtgagttaaaagagcgggatgtctacattgatgctcgcaaaactgaa
attgctgctgtagaatcccttatctctcagtcgcgtgaagggtttagtcattataaagtt
cagagagacaagttgcaaaatgagcggaagagcttatggggcaaagagagtgaactttct
gcagaaattgataagctgagaacagaagttgagaagggagaaaagagccttgatcatgca
actcctggtgatgtgaggagagggctgaaaacagttaaatatatctgcaaagagtatgac
attcgtggggtgtttggtccaattattgagttgcttgattgtgatgaaaggtttttcact
gcggttgaagttactgctggaaacagcttatttcacgtggtggtcgaaaatgatgaaata
tcaacgaagataattaagcaccttaattcattgaaagggggacgagttacttttatacct
ctgaacagggtgagggctcctcatgtatcttatccacagagttctgatgtggttccgctg
ttgaagaaattgaagttttcttccaattatactccagcatttgcacaggtttttgctagg
acagtgatttgccgagacttggatgtggccaccagggttgctcgtagtgaaggtctggac
tgcataactttggaaggtgatcaagtcagcaagaaaggtggtatgactggtggattttat
gatcacagacgctcaaaattgaagtttatgaatatagttgtgcaaaataaaaaatctatc
aacgtgaaggaaagggagctggaagaagtcagaaatatgcttcaagagatagatcaaaag
attacagaacttgtttctgagcagcagaagactgatgccaagcgttctcatgacaagtca
gaattagaacagcttaagcaggacattactaatgccagtaagcagaaacagttgatttct
aaagctcttgaaaataaggagaagtcgcttgcagatgtccgaactcagattgatcagctt
agagctagtatggcaatgaaacgggctgaaatgggcacagagcttattgatcacttgacg
cctgaagaaaaagatcttttatcacgactgaaccctgaaattgcagatcttaaggagaag
cttattgcctgcaagacagaccgtcttgagactgaatcgagaaaggcagagcttgagact
aatctaacgactaaccttaagaggcggaagcaagagttggaggctataatatcgtctgca
gaaactgagactttgcttggcgaagctgaattgaagaggcaggagttaagtgatgctaaa
ctattggtcgaagatgccacgcagcagcttaaaagagtttcggaacgcattgatgaacaa
acaaagcaactccggatgaaaaaagatgaaaagaataagttgaagactttggaggatgag
tatgagagaacacttcaggatgaagccaaagaattagaacaactattaagtaaaagaaat
attcttcttgctaaacaagaagagtactcaaagaagatcagggaattgggtccattatca
tcggatgcttttgaaatgtataagcggaggagtatcaaagaattgcacaagatgctgcac
aggtgcaatgaacagctgcaacagttcagtcatgtaaacaagaaagcacttgaccaatat
gtaaattttactgagcaacgagaagaactccagaaaaggcaagctgaactggatgcaggt
gatgagaaaattagagaacttatatctgttttagatcagcggaaagatgaatcgatagaa
cgtacctttaaaggcgttgctaggcacttccgagaagtcttttctgaactcgtgcaaggg
ggccatggtcatttggttatgatgaagaaaaaggatggtgatcatggtgatgatgatctt
gatgaggatgggcctcgtgaagctgacttggagggaagggtcgaaaaatacattggtgtg
aaagtgaaggtttcttttaccgggcaaggggagacacagtcaatgaagcaattatcgggg
ggccagaaaactgttgttgccctgacacttatattcgccattcagcgatgtgatcccgct
cccttttatctttttgatgagatagatgcggcattggatcctcagtatcgaaccgcagtt
ggaaatatgatacgtcgtctggcagacatggcaaatactcaatttataacaacaacattt
cggcaagagcttgtgaaggtttctgacaagatatatggggtgacacataaaaacagagta
agccgtgtcaatgttgtctccaaagaagacgcactggattttatcgagcatgaccaatct
cacaatactgattaa
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