KEGG   Carya illinoinensis (pecan): 122292908
Entry
122292908         CDS       T08745                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1 isoform X1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122292908
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cill03021]
    122292908
Enzymes [BR:cill01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     122292908
Transcription machinery [BR:cill03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     122292908
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 122292908
NCBI-ProteinID: XP_042957400
LinkDB
Position
13:1321376..1344737
AA seq 1926 aa
MEENPASTILDGEIIGIRFGLATHHEICTASISDCPISHASQLANPFLGLPLEFGKCESC
GTSEPGKCEGHFGYIELPIPIYHPSHVGELKRMLSLLCLKCLKMRRNKVPLKSAGLAERL
LSSCCEDSPQVSIREVKTTDGACYLELKLPQRSLRDGSWNFLEIYGFRYGDDFHRTLLPC
EVRKMLKRIPEETRKKLSGKGYFPQEGYILKYLPVPPNCLSVPEISDGVSVMSSDPSLVM
LKKVLRQVEIIKSSRSGTPNFESHEVEANELQSAVNQYLQIRGSVKASRDIDSRFGLSKE
PNDSTTKAWLEKIRTLFIRKGSGFSSRSVITGDAYKRVDEIGIPFEIAQMITFEEKVNVH
NLKYLQELVDNKLCLTYRDGSSAYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTT
HKHSLQALAVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVDKQ
LLSSHSGKINLQLATDSLLSLKTMFKTYFLDRSATQQLAMFASSSLPRPALLKVHSAAPY
WTALQILQTALPACFDCCGETYLISQSDVLKIDFNSDVISSVVNEIVTSIFFEKGPEEVL
KFFNSLQPLLMENIFAEGFSVGLNDFSINREDIKNIQKNIQSISPLLYHLRATYNELVEL
QLENCIKDVKVPVTNFILKSALGDLMDSKNDSAINKVVQQIGFLGLQLSDKGKFYSKTLV
EDVAALFRCKYLSGVDYPSAEYGLVQNCFFHGLDPYEEIVHSISTREVMVRSSRGLSEPG
TLFKNLMAILRDVVICYDGTVRNVSSNSIIQFDYGVKARGKPNNLFPAGEPVGVLAATAM
SNPAYKAVLDSSPSSNSSWELMKEILLCKVIFKNELIDRRVVLYLNECGCGRKCCREKAA
YLVKNQLKKVSLKDTAVEFLIEYKDQQNVAESSEVDAGLVGHIHLNEMLLGEMNTSMHEV
LQKCQETLSSFRKKKKVAHVFKQTILSISECCSFQQCGANRSSGIPCLMFSWPDTSGIYL
ERTANILADIICPVLLETIIKGDHRVCSANIIWINPGTTTWIRNPCKSQEGELALDIVLE
KSAVKQSGDAWRIVLDCCLPVLHLIDTRRSIPYAIKQLQELLGISCAFDQAVQRLATSVT
MVAKGVLKEHLILLANSMTCAGNLVGFNSGGYKALSRSFNVQAPFAEATLFTPRNCFERS
AEKRHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDTRQVGLNEEGGIDVYNFLHMVRSTA
NGEESNTGCLGADTDDLMLEDECAEWAPSPEHNSSFDKPFFEDSAEFENCLDNQPGESTW
DASTSWDKQMTRENASSGWGTNKAEPGDVSTKPAVDSSKSSGWGAMAGWENNTATKNDSS
GWGMGGVSKKAQENSSTSHGWDAVAPLGKVSKDVEESGWEKNTVTKNVSSVWGTNKAESG
DVSPKAAEKSSKSSGWGGVAGWDINSATKNDSSGWGTSGDQSRVAFVSKKVPENSSRSHS
WDAVIPWGKGDKDVEKNTVTKNVSSGWGMGGEKSRDGFVSKTEQENSSGSHGWDAVTPLG
KRDGDGEENSLNKNVSSGWGTGGDESRDAFVSKKAQDNSSRSCSWDAATPSGKNAGDAVE
SGSCRFDGKPLVEKRTEPFDWDKKVTQETVQSTSGWVSSTIEVGTRDEHSSPSVEHCESP
ALNNSWGQLKSPEPSQGWGSWNESNQLASLNSWDSPNADGGNESERPRWGRQSAEPFKKN
SFEGSRGWGSNSGERKSNWSAKSPGRSHTGSSASGIYTATRQRLDMFTSEEQDVLLDIEK
IMQSIRRIMHQSGYNDGDPLSSEDQSYIQDSVFNYHPDKAVKMGAGIDHFMVSRHINYQD
SRCFYVVSTDGRKEDFSYRKCLDNFIKNKYPDVAEAFLAKYFRKPRSGGNRESNSVPEET
GKELGQ
NT seq 5781 nt   +upstreamnt  +downstreamnt
atggaggaaaatcccgcttcaactattttagatggcgagattattgggatcagatttggt
ttggcaactcatcatgaaatctgtacagcatcgatcagtgactgccctattagccatgcc
agtcaacttgcgaatccctttcttggtctgcctcttgaatttggaaaatgtgaatcttgt
ggtacctctgaaccggggaaatgtgaagggcattttggatacattgaattaccaattccg
atttaccatcctagccatgttggtgaactgaagaggatgttgagcttactttgtttgaag
tgcttaaagatgagaaggaacaaggttccactaaagagtgctggtttggcagaaagattg
ttatcttcctgttgtgaggattctccacaagtttctatcagagaggtaaaaaccacagat
ggtgcttgttacttggaactgaagcttcctcaacggtcacttcgggatggttcttggaac
tttttggaaatatatggttttcgctatggtgacgattttcatcgaactttgcttccttgt
gaggtgaggaaaatgctcaaaagaattcctgaggagactaggaagaagctttctggaaaa
gggtatttccctcaagaaggatatatcctgaaatacttacctgtccctccaaactgcttg
tctgtgccagaaatttctgatggtgtcagtgtcatgtcttcggatccttccttggtgatg
ctcaaaaaagtgctcaggcaagttgagatcatcaagagttcaagatctggtacaccaaat
tttgaatctcatgaagttgaagctaacgagttgcaatcagctgtaaatcagtatctgcag
attaggggttctgtaaaagcatctcgtgatatagactcaagatttgggctgagcaaagag
ccaaatgattcaacaacaaaagcatggcttgaaaaaattagaacattgttcatcagaaaa
ggttcaggcttctcgtcccgcagtgtgattactggggatgcatataaaagggttgatgag
attgggatcccctttgagattgcgcagatgatcacttttgaggagaaagttaacgttcac
aatttgaaatatttgcaagagctggtagataataagttgtgcctaacatatagagatggt
tcttcagcatattcgctgagggagggttcgaaggggcatacatttctgcgacctggtcaa
gtagtacaccgacgcattatggatggggatatggttttcattaataggccgccaaccact
cacaagcattccttgcaagcacttgcagtgtatgttcatgatgaccatacagtgaagata
aacccgcttatttgtgggccattgagtgctgattttgacggtgactgtgtgcatctcttc
tatcctcaatctcttgctgcaaaagcagaagttttggaacttttctctgtggataagcag
ttgcttagctctcacagtggtaaaattaacttgcaactggccactgactcgttgctgtcc
ctaaagacaatgtttaagacatacttcttggacagatcagcaactcagcaattggctatg
tttgcttcatcttcattgccgcggcctgctttgttgaaggttcattctgctgccccttat
tggactgctttgcagatattacagactgctttgcctgcatgctttgactgttgtggggaa
acatacctgattagtcagagtgacgttttgaaaattgacttcaatagtgatgttatatcg
tctgtggttaatgaaattgtgacatcaattttctttgagaagggtcctgaagaggtttta
aaattcttcaattctttacagcctttgttgatggaaaatatatttgcggaaggttttagt
gttggcttaaatgacttttccataaacagggaggacataaaaaatattcagaagaatatt
cagtctatttctcctttgctgtatcacctaagagcaacttataatgagctggtggagttg
caattggagaattgcatcaaagatgtgaaagtgccagttacaaattttattttgaagtct
gcattgggtgatttaatggactccaaaaatgattcagccattaacaaggtagttcaacaa
attggcttcctgggcctgcaactttctgataaaggaaaattttattctaagaccttagtt
gaagacgtggctgcactttttcgttgtaaatatttatctggagttgattacccttctgca
gagtatggattagttcaaaattgtttttttcatgggttggatccctatgaggagattgtt
cattcaatatctacgagagaagtaatggttcgctcctcgagaggattgtctgaacctggt
actttatttaaaaacttaatggccatccttcgagatgttgttatttgttacgatggcacc
gtcagaaatgttagcagcaattccataatccaatttgattatggggtaaaggcgagaggt
aagcccaataatttatttcctgctggcgaacctgttggcgtcttagctgcaacagcaatg
tcaaatccggcatataaggcagttcttgattcttctccaagcagtaattcctcatgggag
ctgatgaaggaaatactgctttgcaaggtcatttttaagaatgaacttattgatcgccgt
gtggtattatatttgaatgaatgtggctgtgggagaaagtgttgccgagaaaaagcagca
tatttagtaaagaatcaattgaagaaagtcagccttaaagatacggcggttgagtttctg
attgaatataaagaccagcaaaatgtagcagaaagttctgaagttgatgcaggcctagtt
ggtcatattcatctaaatgagatgctgttgggagagatgaacactagtatgcatgaggtt
cttcaaaagtgccaagagactcttagttcattccgaaagaagaagaaagttgctcatgtt
tttaaacagacgattctgtctatcagtgaatgttgctctttccagcaatgtggtgcaaat
agaagctctggtatcccatgtttgatgttttcttggccagacacaagcggtatttatttg
gagaggactgcaaatatccttgcggacattatttgccctgttcttttagaaaccatcatt
aaaggtgaccatcgagtttgctcggcaaacataatatggatcaatccaggtacgacaact
tggataagaaacccttgcaagtctcaagagggtgaattagcactggacattgttctggag
aaatcagctgtgaagcaaagtggtgacgcttggaggattgtattagactgttgtcttcct
gtacttcatttaattgacaccaggcgttccataccatatgcaataaaacagcttcaagaa
ttgctagggatttcttgtgcttttgatcaagctgttcagcgccttgcaacatcagtgaca
atggtggcaaaaggtgttctcaaagagcatctcattctcctggcaaacagcatgacatgt
gctggaaatttggttggcttcaattctggtggctataaagctttgtctcgctcatttaat
gtccaagcaccatttgcggaagcgacactttttacaccaagaaattgttttgagagatct
gctgaaaagcgacatgtggattctctatcgagtatagttgcatcttgttcctggggaaaa
catgtggcagtgggtacaggatctagatttgatgtcctttgggacacaaggcaggtagga
ctgaacgaagagggtggaatagatgtgtataactttctacatatggtgagaagtactgca
aatggagaagaatcaaataccggttgtctgggtgcagatactgatgatcttatgctggaa
gatgaatgtgcagagtgggctccctccccagagcataactcaagttttgataagccattc
tttgaagacagtgctgagtttgaaaattgtttagataatcagccaggggaatcaacatgg
gatgcttctactagttgggacaaacaaatgactagagaaaatgcttcatctggttggggg
accaataaagctgaaccaggtgatgtgtccacaaaacctgctgtggattcttccaagtct
agtggttggggtgccatggctggatgggagaataatacagcaaccaagaatgattcttct
ggttggggaatgggtggagtctccaaaaaagcacaagagaactcttccacatcccacggc
tgggatgctgtggctcctttgggaaaagtgagcaaagatgttgaggaatctggatgggag
aaaaatacggtgaccaaaaatgtttcttctgtttgggggaccaataaagctgaatcaggt
gatgtttccccaaaagccgcagagaaatcttccaagtccagtggttggggtggtgtggct
gggtgggatataaattcagcaaccaaaaatgattcttctggttggggtacaagtggagat
caatcacgagttgcttttgtctccaaaaaagtgccagagaactcttccagatcccacagc
tgggatgctgtgattccttggggaaaaggggacaaagatgttgagaaaaatacggttacc
aaaaacgtttcttctggttggggaatgggtggtgaaaaatcacgagatggttttgtctcc
aaaacagagcaagagaactcttccggctcccatggctgggatgctgtaactcctttggga
aaaagggacggagatggtgaggaaaattcattgaacaaaaatgtttcttctggttgggga
acaggtggagatgaatcacgggatgcttttgtctcaaaaaaagcacaagacaactcttcc
agatcctgtagctgggatgctgcaactccttctggaaaaaatgctggggatgctgtagaa
tctggatcgtgcagatttgatgggaagcctctggttgaaaaaagaacagagccttttgat
tgggataagaaggtgacacaagagacagttcagtcaacttctggttgggtttcttcaact
attgaagtagggactagagatgagcattcgtccccttctgtggaacattgcgagtcacct
gccctcaataattcatgggggcagctgaagtcaccagaaccttcacaaggttggggctct
tggaacgaatctaatcaattagcaagtttgaacagttgggactcaccaaatgctgacggt
ggaaatgaaagtgaaagacctcggtggggaaggcagagtgcagaaccattcaagaaaaat
tcgtttgaaggatcaaggggatggggttcaaattctggagagaggaaatctaactggtct
gcaaaatctcctggaaggtcacatactggttctagtgctagtggaatatatactgctacc
agacagcgattagatatgttcacttccgaggaacaagatgttctgttggacattgaaaag
attatgcagtctattagaagaataatgcatcagtctgggtataatgatggggatccacta
tcatctgaagatcagtcctatatacaggatagtgtttttaactatcatccagataaagct
gtgaaaatgggtgctggaattgatcatttcatggttagcaggcatatcaattaccaggat
agccggtgcttctacgttgtctcaactgatggtcgtaaggaagatttttcctatcgcaaa
tgcctggataacttcatcaagaacaagtatccagacgttgctgaagcattccttgcaaag
tatttcagaaagccccgttctggaggaaaccgggaaagcaattccgttccagaggaaacg
ggtaaagagctagggcagtaa

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