Carya illinoinensis (pecan): 122293294
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Entry
122293294 CDS
T08745
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122293294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122293294
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122293294
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122293294
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
122293294
NCBI-ProteinID:
XP_042957760
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All DBs
Position
14:complement(24446681..24447779)
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AA seq
280 aa
AA seq
DB search
MITDDSIPHLRPIVIREVWAANLDSEFELIRGVIDSYPYISMDTEFPGLVFRPAVDTAKP
YFGQLRPSDHYRVLKSNVDVLNLIQVGLTLSDADGNLPDLGTGNRFIWEFNFSDFDVARD
AHAPDSIELLRRQGIDFDRNREEGLDSARFAELMMSSGLVCNDSVSWVTFHSAYDFGYLV
KILTRRRLPSRMEEFLKIMRVLFGNKVYDIKYMMRFCNSLYGGLDRVARTLDVNRVVGKC
HQAGSDSLLTWHAFQKMRDVYFVADGPEKHAGVLYGLEVF
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgattaccgacgattccattccgcatctgagaccgatcgtgatacgggaggtctgggcg
gctaatttggactctgaatttgagctgataaggggcgtcatcgacagttacccatatatt
tccatggataccgagttccccggccttgttttccggcctgctgtagataccgccaagccg
tacttcggtcagcttcggccgtcggatcattaccgtgtcctgaaaagcaacgtcgacgtt
ctgaaccttatacaggtgggcctcactctctccgacgccgacgggaaccttccggacctc
ggtactgggaaccggttcatctgggagttcaacttcagcgactttgacgtggcacgtgat
gcccacgctcctgactcgatcgagttgttgagaaggcaagggattgacttcgatagaaat
agggaggaggggctcgactcggcccggtttgcggagttgatgatgtcatcgggacttgtt
tgtaacgattctgtgagttgggtgacgtttcacagcgcgtacgactttgggtacctggtg
aagatcctcacgcgccggaggctgccgagtcgtatggaggaattcttgaaaatcatgagg
gtgcttttcggaaacaaggtttacgacatcaagtacatgatgaggttctgtaatagcttg
tatggcggcctggaccgggtggccaggaccctcgacgtgaaccgggtggttgggaaatgc
caccaggccggttcagatagtttgctgacgtggcatgccttccaaaagatgagggatgtg
tattttgtagctgatgggccggaaaaacatgccggtgtcttgtatggcttagaagtgttt
taa
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