KEGG   Carya illinoinensis (pecan): 122294365
Entry
122294365         CDS       T08745                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03020  RNA polymerase
cill03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122294365
  09124 Replication and repair
   03420 Nucleotide excision repair
    122294365
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cill03021]
    122294365
   03019 Messenger RNA biogenesis [BR:cill03019]
    122294365
   03400 DNA repair and recombination proteins [BR:cill03400]
    122294365
Transcription machinery [BR:cill03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     122294365
Messenger RNA biogenesis [BR:cill03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     122294365
DNA repair and recombination proteins [BR:cill03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      122294365
SSDB
Motif
Pfam: SHS2_Rpb7-N S1 Vg_Tdu
Other DBs
NCBI-GeneID: 122294365
NCBI-ProteinID: XP_042958974
LinkDB
Position
14:9924530..9927628
AA seq 176 aa
MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR
DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA
NT seq 531 nt   +upstreamnt  +downstreamnt
atgttcttccacatagtactggagcggaacatgcagctacacccacgccacttcggccgt
aatctccgcgagaacctcgtctccaagctcatgaaagatgtcgagggcacgtgcagcggt
cgacatgggtttgtggtggcaataaccggtatagagaatgttgggaaagggttgattcgt
gatgggacagggtttgtgacatttccagtgaagtaccaatgtgttgtattcagaccattt
aagggagagattttagaagctgttgttaccatggtgaacaagatgggattttttgccgaa
gctgggcctgttcaaatttttgtttcaaaccatttgataccggatgatatggaattccaa
tctggagatatgccaaattatacaacttcagatggatcagtcaagatacagaaggatagt
gaagtgcgcctgaaaataattgggactcgagttgatgctacagaaattttctgcattggt
accataaaagatgatttcttgggtgtgataaatgatcccgcagcggcatag

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