Carya illinoinensis (pecan): 122294527
Help
Entry
122294527 CDS
T08745
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cill04131
]
122294527
Membrane trafficking [BR:
cill04131
]
Protein recycling
Others
EARP complex
122294527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
122294527
NCBI-ProteinID:
XP_042959262
LinkDB
All DBs
Position
14:complement(27099934..27131986)
Genome browser
AA seq
1128 aa
AA seq
DB search
MQPNLFPFGTVLGNPFLFNGDLSEGFESSRVFFLVPFLLFQGGGMDLSKVGEKILSSVRS
ARSLGLLPSTSDRPEVPARVAAAAAVAHALAGLPPHQRFDLPSSSEGLRSIYGIRPSGQV
VEELEEDFYGEDFDPIRHVLENIPSDENDLAYFEKQAALRLAQLDKVAESLSHHVMEHHE
VMVKGMNLVRELEKDLKIANVICMNGRRHLNSSMNEVSRDLIVNSNSKKKQALLDMLPVL
TELRHAVDMQVALESLVEEGNYCKAFQVLSEYLQILDSFSELSAMQEMSRGVEVWLGKTL
QKLDSLLLGVCQEFKQEGYLTVVDAYALIGDVSGLAEKIQSFFMQEVLSETHSVLKNIVQ
EDQEVMENTRLTYSDLCLRIPESKFRQCLLATLAVLFKLMCSYYEIMGFQLDNKDLAGQT
SNTEQKEKDICLSSGGVPQVDSDARNSLNSQEINGSLLESVDGKPGSSPEESTSTSCLVE
TTKTNVTTSLDSQNTIDEARKDYSTASSSGSPWYQLRKDATAFVSQTLQRGRKNLWQLTT
SRISVLLSSVAVCSTSIHQFLKNYEDLNVFILAGEAFCGVEAVEFRQKLKIVCENYFVAF
HRQNIYALKMVLEKENWQNLPPDTVQVISFPGLLGDGAPIIVPSAGNSGNARVLPSNKSA
SLVDTSSKHGFLHWLESGNPFLQKAAYASKEGHTSPLNGTICSEFDGNISDSSHGDKFSP
RKSDVNKINGSESISEDENEDLLADFIDEDSQLPSRISKPNLPRRYSSHWKHEEITAQTG
SSVCLLRSMDKYARLMQKLEIVNIEFFKGVCQLFGVFFYFVFETFGQQNPSSSGKSLTDS
LNYRLKTALSRITQDCDQWIKYQSSSPTSLNTSYTNADVTSMSPSSTNFGHFPGTSFGLK
ERCAGADSLSLVAQVLHRSKAHLQSMLLQKNGTIVDDFYVHLVDAVPFLVEHTHRTTAKL
LLNMNGYVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIRKEVQDHLLEYG
VEIVAETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVSVNVRPQLQMVEAFIKAYY
LPETEYVHWARGHPEYSKSQIVGLINLVATMKGWKRKNRLDVLEKIEV
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgaatctgttcccgttcggtaccgttttgggaaatccattcttgttcaatggc
gatttgagcgaggggttcgagagctctagggttttcttcttggtcccgttcttgttgttc
caaggaggcgggatggatttgtccaaggtgggtgagaagattctgagctcggttaggtcc
gccagatcacttggacttcttccttctacttctgatcgccccgaggttcctgcccgtgtt
gcagcagcagcagctgttgctcatgctcttgcgggattgcctccgcatcagaggtttgat
ctgccatcaagttcagaagggctgagatcgatatatggaatcagaccttctggtcaagtt
gtggaggagttagaggaagacttttatggagaggacttcgatccaattaggcatgtttta
gaaaatattccatctgatgaaaatgacctggcgtattttgagaaacaggcagctcttaga
ttagctcagcttgataaagtggcagaaagtttatctcatcatgttatggagcatcatgaa
gtaatggtaaaggggatgaatcttgtccgggagttggaaaaagacttgaagattgcgaat
gtcatctgcatgaatggaagaagacatctaaattcttctatgaatgaagtttcgagggac
ctgattgtaaattctaattccaaaaagaaacaagctcttctggatatgcttccagtttta
actgagcttcgtcatgcagtggacatgcaagtggcacttgaatctcttgttgaggaagga
aattactgcaaggcgttccaagttctatctgagtatttgcaaatcttagatagtttttca
gagctttcagcaatgcaagagatgagtcgtggtgtggaggtatggctgggaaaaaccctt
caaaaactggattcacttttacttggggtttgccaggagtttaaacaggagggctatttg
accgtggttgatgcttacgcactaattggggatgtatctggtcttgctgaaaagatacag
agcttctttatgcaggaggttctgtcagaaacacactctgtattgaagaatatcgtgcaa
gaggatcaggaagtcatggaaaatactagacttacctacagtgatctatgccttcggata
cccgaatctaagtttaggcagtgtttgttagcaacactagctgttttattcaagttgatg
tgttcatattatgagattatgggctttcagctggacaataaggatttggcaggtcaaact
tcaaatacagaacagaaggaaaaggacatttgtttgagttcaggaggggttccacaagtt
gattcggatgcaagaaattctttaaattcccaagaaattaatggctctctcttggaatct
gttgatggaaagcctggttcatctccggaagaatctacgagcaccagctgtttagttgag
actaccaaaactaacgttacgactagtttagactctcaaaatacaattgatgaggctagg
aaggattatagtacggcatctagtagtggatccccatggtatcaactgcggaaagatgct
acagcatttgtttcacaaacccttcagagaggacgcaagaatctttggcaactcacaact
agtcgtatatctgtattgctttcttctgttgctgtttgctctacaagcattcaccaattc
ttgaaaaattatgaagatctgaatgtcttcatcttagctggggaagccttctgtggagtt
gaagcggttgagttcagacagaagttgaagattgtttgtgaaaactattttgtagcattt
catcggcagaatatttacgcacttaaaatggttttggaaaaggaaaattggcaaaacttg
ccaccagatacggtacaagtaataagttttcctgggcttcttggtgatggagcacccata
attgttccatctgctgggaactctggtaatgccagggtgcttccttccaataaatcagca
agcttggttgataccagttcgaagcatgggtttttacattggcttgagagtggaaatccg
tttctgcaaaaagcagcatacgcttccaaagaaggccatacttccccacttaatgggact
atctgcagtgaatttgatggaaatataagtgacagttctcatggtgataagttctcacca
cgaaagagtgatgtaaataaaatcaatggctctgaatctatttccgaggatgaaaacgaa
gatcttcttgcagactttattgatgaggacagtcaacttccaagtcgaatttcaaaaccc
aatcttccaagaagatactcttcacattggaaacacgaagagataacagcccaaacagga
tcctctgtttgtcttctaaggtccatggataaatatgcaaggcttatgcagaaattagaa
atagtgaatattgagtttttcaagggagtatgccagctgtttggggtttttttctatttt
gtatttgaaacatttggtcagcaaaatcccagctcaagtggaaaaagcttaactgactct
cttaattatcggctaaagacagccttatccagaataacacaagattgtgatcagtggata
aaataccagtcctcttcacccacctccttgaacacatcatatacgaatgcggatgttaca
tctatgagtccatccagtacaaattttgggcactttccaggaacatctttcggtctcaag
gaaagatgtgcaggtgctgacagtttatctcttgttgctcaagtattgcatagatctaaa
gctcatctccaatcgatgcttctacaaaaaaatggaactatagttgacgatttttatgtc
catctggtggatgctgtgccgtttcttgtagagcacacacataggacaactgcaaaacta
cttctcaacatgaatgggtatgttgatcggattgccaatgctaaatgggaagtgaaagag
cttggtctagagcataatgggtatgttgacttgttgctgggagaatttaagcactataaa
accagacttgctcatgggggaatccgcaaagaggttcaagaccacctcttagagtatgga
gttgagatcgttgccgaaactctcattgaaggtctatctcgagttaagcggtgtacagat
gaaggaagagctctcatgtcattggatcttcaggttttaattaatggtttacagcatttt
gtgtctgtaaacgtgagaccccaattacagatggttgaggccttcatcaaggcttactac
ctacctgaaactgaatatgtacactgggcacggggtcacccagaatacagtaaaagccaa
atcgttgggctgatcaaccttgttgctaccatgaaaggctggaagagaaaaaacaggttg
gatgtactggagaagatcgaggtgtag
DBGET
integrated database retrieval system
