Carya illinoinensis (pecan): 122294733
Help
Entry
122294733 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52A-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122294733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122294733
03009 Ribosome biogenesis [BR:
cill03009
]
122294733
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122294733
Spliceosome [BR:
cill03041
]
Complex A
U1 snRNP components
U1 related factors
122294733
Complex B
122294733
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
Pre-60S particles
Helicases
122294733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
SWI2_SNF2
PRAI
Motif
Other DBs
NCBI-GeneID:
122294733
NCBI-ProteinID:
XP_042959591
LinkDB
All DBs
Position
14:complement(7616797..7625250)
Genome browser
AA seq
542 aa
AA seq
DB search
MSYVPPHLRSLGSTASTTGTSSLTLDADRSKLSKSSTDFRQSSRSLRLAVPEPVFPHWNP
SERVLRMKPEQVENVRLRLNVDVTVALDSSPAPAPVESFTDMCLDPSIMKDIAFHEYTTP
TSIQAQAMPVALSGRDLLGCAETGSGKTAAFSIPMIQHCLAQAPVRRGDGPLALVLAPTR
ELAQQIEKEVKAFSRSLDSLKTAIVVGGTNIADQRSELKAGVDIVVATPGRFIDHLQQGN
TSISRVSFVVLDEADRMLDMGFEPQIREVMCNLPEKHQTLLFSATMPTEIEALAQEYLTN
PVQVKVGKVSSPTANVSQILEKVPDSEKIDRLLDLLVEEATQAERSGHPLPLTIVFVERK
TRCDEVAEALVAQGLHAVALHGGRNQSEREAALRDFRNGSTKILVATDVASRGLDVTGVS
HVINLDLPKTMEDYVHRIGRTGRAGSMGQATSFFTDRDMFLVANIKKAIADVGSGNPVAY
ATGKVARRKEREEAAAQKEARTALSKLSLMGPTAISIEDKYKFMIAASNNKREGAADSAW
DD
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtgcctcctcacctcaggagcttgggctcgaccgccagtaccaccggaact
tcgtctcttaccctagacgctgaccggagcaagctctccaagtcctccactgactttcgt
caaagctcacgttctctccgtctcgccgttcccgaacccgttttccctcactggaatccc
tccgaacgtgttctacgcatgaagccggaacaggtcgaaaacgtccgtttgcggctcaac
gttgatgttactgtcgctttggactcctctcccgctcctgcacccgttgagtcttttacg
gatatgtgtttggatcctagcatcatgaaggatatagcatttcatgaatacaccacgcct
acttcgattcaagctcaggccatgccagttgctctcagtggaagggatttgttgggttgt
gctgaaacaggaagtggcaaaacagctgcattttccattccgatgatacagcattgcctg
gctcaagctccagttcgccgtggtgatggacctttggcattggtactggctcctactaga
gagcttgcccagcaaatagaaaaagaggttaaagcttttagtagatctcttgactcactc
aaaactgcaatagttgtgggaggaacaaacattgctgatcagaggtctgagctaaaggca
ggagtggatattgtggtcgctactcctggaaggtttattgatcatttacagcaagggaac
acttccatctctagagtttcatttgtggttttggatgaagctgatagaatgcttgatatg
gggtttgaaccacaaattagagaggtgatgtgtaaccttccggaaaagcatcaaactctg
ctgtttagtgcaaccatgcctacagagattgaagctttagcgcaggagtacttaacaaac
cctgttcaagtgaaggtcggaaaagtaagtagcccaacagcaaatgtatctcaaatattg
gagaaggttcctgacagtgagaagattgataggcttctagatttgcttgtagaggaggca
acacaagctgaaagatctggtcatccgcttcctttaactattgtatttgtggaaaggaag
acaaggtgtgatgaagttgctgaagctttggtagcgcaaggcttacatgcagttgcgctt
catggtggtcgcaatcagagcgaaagagaggctgctctacgtgattttaggaatggctct
acaaaaatattggttgctaccgatgttgcatctcgtggtttggatgtcacgggagtttct
catgttataaatttggatctccccaagacaatggaagattatgtgcaccggattggaagg
acagggcgtgcaggatcaatgggccaagctacttcattcttcaccgatcgtgatatgttc
cttgtggcaaatataaagaaagcaattgcagatgtgggatctgggaaccctgtggcttat
gcaaccggaaaggttgcaagaaggaaggagagagaagaagcagctgcacagaaagaagca
agaactgccctgtccaaactctcactgatgggacccactgcaataagcatcgaggataag
tataagttcatgatcgcagcctctaacaataaaagagagggagctgcagatagtgcctgg
gatgattga
DBGET
integrated database retrieval system
