Carya illinoinensis (pecan): 122294761
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Entry
122294761 CDS
T08745
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122294761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cill04131
]
122294761
Membrane trafficking [BR:
cill04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
122294761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
WD40_WDHD1_1st
zf_RING_Vps8
WD40
Beta-prop_HPS5
Beta-prop_EML_2
WDR55
WD40_Prp19
zf-RING_2
Beta-prop_WDR11_2nd
WDR90_beta-prop_4th
EIF3I
zf_RING_Vps8_fungal
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
122294761
NCBI-ProteinID:
XP_042959626
LinkDB
All DBs
Position
14:27158382..27174832
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AA seq
962 aa
AA seq
DB search
MRPLSAALQMAPIPSENGVIGDDEREEEDEEEGGDDVEEEVEEEPRLKYQRMGGSIPVLL
MNDAASCIAVAERMIALGTHGGTVHILDFLGNQIKEFHVHTAAVNDLSFDIEGEYVGSCS
DDGSVVINSLFTDEKMKFEYHRPMKAIALDPDYVRKTSRRFVAGGLAGHLYYNTKKWFGY
RDQVLHSGEGPIHAVKWRTSLIAWANDAGVKVYDTADDQRITFIERPRGSPHPELLVPHL
VWQDDTLLVIGWGSSVKIASIRTNQHRATDGAYKHVPMSYLNQVDIVASFQTSHFISGVA
PFGDSLVVLAYIPGEEKGEKEFTSTIPSRQGNAQRPEVRIVTWSNDEISTDALPIHGFEH
YKAKDYLLAHAPFSGSSYAGGHWTAGDEPLYYVVSPKDVVIAKPRDAEDHIAWLLQHGWH
EKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLQGSASAWERWVFHFA
HLRQLPVLVPYIPTENPKLRDTAYEVALVALATNSSFHEGLLSTVKSWPHVIYSALPVIA
AIETQLTTSSMTDALKEALAQLYVIDGQYEKALLIYADRMKPEVFDYIEKYNLHHSIREK
VLQLMMIDCKHGVLLLIQNKDLITPSDVVSQLLNASNKCDPRYFLHLYLHSLFEVNPNAG
KDFHDMQVELYADFDPKMLLPFLRSSQHYTLEKAYEICIGRDLLREQVFILGRMGNSKQA
LAVIINNLGDIEEAVEFVTMQNDDDLWEELIKQCLHKPEMVGMLLEHTVGSLDPLYIVNM
VPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADSVNLLVKYYKEAIHGIYLSSEE
DEARAKRNDSMASQAYVRSSNVRTLEVKSKTKGGARCCMCFDPFSIQNVSVIVFFCCHAY
HMTCLMDSSYNVSGRKGSGATYPEPVVEYEYETGDVDDGDDDDGSQSDAHRMRCILCTTA
AG
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgctaagcgcagctttgcaaatggctccgataccctcggagaatggcgtcatc
ggagacgatgagagagaagaagaagacgaagaagaaggaggcgacgacgtcgaagaagaa
gtagaagaagagccgaggctcaagtaccagagaatggggggcagcataccggtcctgctg
atgaacgatgcggcgtcgtgtatcgcagtcgcggagcgcatgatcgcactcgggacccat
ggtggcaccgttcacatccttgattttcttgggaaccagattaaggaattccatgttcat
actgctgctgtcaatgaccttagctttgacatagaaggtgaatatgtaggaagctgttct
gatgatgggtctgtcgtaataaacagccttttcaccgatgagaaaatgaagtttgagtat
catcgcccaatgaaggctattgctctggacccagattatgtgagaaaaacgtcaagaaga
tttgtggctggtgggttagcaggtcatttatattataataccaagaaatggtttggctat
cgtgaccaggtcttgcattctggtgaaggtccaattcatgctgtgaagtggagaacaagt
ctcattgcttgggctaatgatgcgggagtgaaagtttatgacactgcagatgatcagcgt
ataacatttattgaaagaccaagaggaagcccacatcctgagcttttggttcctcacttg
gtttggcaggacgacactctcttggtcattggctggggatcatctgttaaaattgcatca
ataagaacaaatcagcatagagcaacggatggggcgtataaacatgttccgatgtcatac
ttgaaccaggtggatattgtggcatctttccaaaccagccatttcatctcaggagtagct
ccttttggtgactctttggttgttctagcatatattcctggggaagaaaagggggagaag
gaatttactagcaccattccatcacggcagggaaatgcacaaagacctgaagtgcgtata
gtaacatggagtaatgatgagatttctacagatgccctacctatacatggctttgagcat
tacaaggcaaaggattatttgctagcccatgcacctttctcaggtagcagctatgctggt
ggtcactggactgcaggtgatgaaccactgtactatgttgtatccccaaaggatgtagtt
attgcaaaaccgagggatgccgaagatcatattgcatggcttcttcaacatgggtggcat
gaaaaagctttggcagctgttgaagctggtcagggacggagtgaacttcttgatgaagtc
ggatcaagataccttgatcatttgattgtggaaaggaagtatgctgaagctgcatctttg
tgtcccaaattgttgcaaggatctgcttcagcatgggaaagatgggttttccactttgct
catctccgtcagcttcctgtgttggttccatatataccaacagaaaacccaaaactgcgt
gatactgcttatgaggttgctcttgtggctttggctacaaattcttctttccatgagggt
cttttgtcaactgtcaaatcttggccacatgtgatttattcagcattgcctgttattgct
gccatagaaactcagcttactacttcatccatgactgatgcactcaaagaggcactagca
caattgtatgtaatagatgggcaatacgagaaagctcttttaatctatgctgatcgtatg
aagccagaagtgtttgactacatcgaaaaatacaacttgcatcactcaattcgtgaaaag
gtcttgcaacttatgatgatagattgcaagcatggagttctgttattgatccaaaataag
gacttgattactccatctgatgttgtttctcaacttctgaatgccagcaataagtgtgat
cccagatatttcctgcacctgtatctccattctttatttgaagtaaatccaaatgctgga
aaggattttcatgatatgcaggtggagctctatgcagactttgatccaaagatgctactt
ccttttcttcgtagtagtcaacattatacacttgaaaaggcatatgaaatttgcatcgga
agagatcttctaagggagcaggtcttcatccttggaagaatgggaaattctaaacaagcc
cttgctgtcattataaataacttaggggatatagaggaggctgtagagtttgtgactatg
cagaatgatgatgacctttgggaagaattaataaagcaatgtcttcacaaacctgaaatg
gtgggtatgttgttggagcatacagttggaagtcttgatcctctctatattgtaaatatg
gttcccaatggcttggagatacctcggcttagggatcggctggtcaagatcattactgat
tataggactgaaacatctcttagacatggttgcaatgatatcctcaaggctgatagtgtc
aaccttttggttaagtattacaaagaggcaatacatgggatttacttgagcagtgaagaa
gatgaagcacgggcaaagaggaacgacagtatggcttctcaggcatatgtgagatcatca
aatgtgagaaccttggaggttaagtctaagactaagggtggtgcaaggtgttgcatgtgt
tttgatcccttctctatacaaaatgtgtcagtcatcgttttcttttgctgtcatgcttat
cacatgacttgtcttatggattcttcctacaatgttagtggtaggaaagggtccggagcc
acctacccagagcctgttgtagaatatgaatatgaaactggtgatgtggatgatggtgac
gatgatgatggttcccagtcagatgcacatcgtatgcgttgtatcttatgtactacagct
gctggttga
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