KEGG   Carya illinoinensis (pecan): 122294892
Entry
122294892         CDS       T08745                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI1-like
  KO
K10752  histone-binding protein RBBP4
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03082  ATP-dependent chromatin remodeling
cill03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    122294892
   03083 Polycomb repressive complex
    122294892
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cill03036]
    122294892
Chromosome and associated proteins [BR:cill03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     122294892
  Histone modification proteins
   HAT complexes
    HATB complex
     122294892
   HDAC complexes
    Sin3A-HDAC complex
     122294892
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     122294892
    PRC2.2
     122294892
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     122294892
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    122294892
  Chromatin remodeling factors
   NuRD complex
    122294892
   NuRF complex
    122294892
   NuRF complex (fruit fly)
    122294892
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd WD40_WDHD1_1st EIF3I WD40_RFWD3 Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 eIF2A Beta-prop_RIG_1st Beta-prop_WDR19_1st Beta-prop_HPS5 MIOS_WD40 Beta-prop_NUP159_NUP214 Beta-prop_SPT8 WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_TEP1_C
Other DBs
NCBI-GeneID: 122294892
NCBI-ProteinID: XP_042959809
LinkDB
Position
14:1500751..1505968
AA seq 423 aa
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
YSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARQYDDDRTDVGGFGCANGKVQIIQ
QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE
GYGLSWSKFKEGYLLSGSDDAQICLWDISATPKNKSLDAMQIFKVHEGVVEDVAWHLRHE
YLFGSVGDDQHLLIWDLRTPSVSKPVHSVIAHQSEVNCLAFNPFNEWVVATGSTDKTVKL
FDLRKISTALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPSEDWVVASVAEDNILQIWQMAENIYHDEDDLPEEST
KAT
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgggaaaagacgaggaggagatgagaggggagatagaggagaggctaataaacgaggag
tacaagatctggaagaagaacaccccgttcctctacgatctggtcatcacccacgccctt
gagtggccttctctcaccgtcgagtggctgccggaccgggaggagccccccggcaaggac
tattccgtccagaagatgatcctaggcacccacacctccgagaatgagcccaattacctc
atgctcgcccaggtccaactccctctcgaggacgcagagaacgacgcacgccaatacgac
gacgaccgcaccgatgtcggtggcttcggctgcgccaatggaaaggtgcaaataatccag
caaataaatcatgatggagaggtcaatcgtgctcgttatatgcctcaaaatccatttatt
attgccactaagacagttagtgctgaagtttatgttttcgattatagcaaacacccgtct
aagcctcctttagatggtgcatgcagccctgacttacggttgaggggccacagcactgaa
ggatatggtttatcgtggagtaagtttaaggagggctatttgctgagtggctctgatgat
gctcagatatgcttgtgggatattagtgcaactccaaagaacaagagccttgatgccatg
caaatttttaaggttcatgaaggtgttgtagaagatgtagcatggcatctgaggcatgaa
tacttatttggttcggtaggtgatgatcagcacctgctaatatgggatctccggactcca
tcagttagcaagcctgtccactctgttattgctcatcaaagtgaggtaaactgcttagct
ttcaatccctttaatgaatgggttgttgcaacgggctctactgataaaactgtgaagttg
ttcgatctacgtaagatcagcactgcactccacacctttgattgtcacaaggaggaggtt
ttccaagttggctggaatccaaaaaatgagactatcttagcttcttgttgtcttggtagg
agactcatggtgtgggatcttagcaggattgatgaagagcaaacaccagaggatgctgaa
gatggaccaccggagttactttttattcatggtggtcatacgagtaaaatatctgatttt
tcctggaacccaagtgaagactgggttgtcgctagtgtagctgaagataacatacttcaa
atctggcagatggccgagaacatctaccatgatgaagatgatttaccggaagaatctaca
aaggctacctag

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