Carya illinoinensis (pecan): 122296054
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Entry
122296054 CDS
T08745
Name
(RefSeq) F-box protein SKP2B-like isoform X1
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122296054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cill04121
]
122296054
Ubiquitin system [BR:
cill04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122296054
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Motif
Pfam:
LRR_6
LRR_4
F-box-like
F-box
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
122296054
NCBI-ProteinID:
XP_042961377
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Position
15:complement(3213722..3217801)
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AA seq
373 aa
AA seq
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MVGKDNLRTEDLNLCFEKLMMLCGNGIGTGGVKMEGGVITGWKDIPMELLLQIVSLVDDQ
TVIMASGVCRGWRDAISLGLTHLSLSWCNKNMNNLVLSLAPKFTKLQTLILRQDKTQLED
DAVQTIANFCHDLQVLDLSKSFKLSDRSLFSLAHGCRNLSKLNISGCSAFSDSALAYLTS
FCQNLKVLNLCGCGQAASDIVLQAIGRYCSQLQSLNLGWCDNVSDVGVMCLAYGCPDLRT
LDLCGCVRITDDSVIALANKCLHLRSLGLYYCQNITDRAMYSLAHSRVKNKKPMWKPMKE
LNDEDGLRTLNISQCTALTPPAVQAVCDTFPALHTCSGRHSLIMSGCLNLMSVHCACAVH
AHRTASNIPHPAH
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggtgggtaaagacaacttgaggacagaggacttgaacttgtgctttgagaagcttatg
atgctttgtggaaatggaattggtacaggaggagtaaagatggaaggtggtgtcatcact
gggtggaaggatatccccatggagctgttgttgcaaattgtttctcttgtcgacgatcag
acagtgatcatggcttctggagtgtgtcgtgggtggagagatgctattagcttgggcctt
acccatctctctctctcatggtgcaacaagaacatgaataacttggtcctatctcttgct
ccaaagttcacaaaattgcagactctcatactacgccaagataaaacacagctcgaggat
gatgctgttcaaactattgcaaacttctgtcatgatctgcaggtcctggacctcagcaaa
agcttcaagctcagcgaccgctccctgttttccctggctcatgggtgtcgtaatctttca
aaactcaatattagtggatgttcagcattcagtgatagtgctcttgcatatctgacaagt
ttttgccaaaatctaaaggttttaaatctttgtggatgcggccaagctgcatctgacatt
gtgttacaggctattggacgctactgcagccagttacagtctttaaatctaggatggtgt
gataatgtaagtgatgtcggagtaatgtgtttagcatatggatgccctgatctcagaacc
cttgatttgtgtggctgcgtccgtataacagatgatagtgtgattgctcttgcaaacaaa
tgtcttcatttgagatcccttggtctctactattgtcagaacatcacagacagagccatg
tactctttggcccacagccgagtgaaaaacaagaaaccaatgtggaaacctatgaaagag
ctgaatgatgaagatgggcttaggactctcaacatcagtcagtgcacggcactcactccc
cctgctgttcaggcagtgtgcgatacctttcctgctctccacacttgctcaggaaggcat
tcacttatcatgagcggctgtttgaacttaatgtctgtgcattgtgcctgtgctgtccac
gcacaccgcacagccagcaacattcctcacccagctcattga
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