Carya illinoinensis (pecan): 122296180
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Entry
122296180 CDS
T08745
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122296180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cill03400
]
122296180
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122296180
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
122296180
NCBI-ProteinID:
XP_042961589
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Position
15:33606015..33622547
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AA seq
945 aa
AA seq
DB search
MGENFEEQNKLPELKLDARQAQGFLSFFKTLPHDPRAVRFFDRRDYYTAHGENATFIAKT
YYRTTTSLRQLGSGSDALSSVSVSRNMFETISRDLLLERTDHTLELYEGSGSNWRLVKSG
TPGNLSSFEDVLFANNEMQDSPVVVALSPNFRENGCTIGLGYIDLTKRVLGLAEFLDDSH
FTNLESALVALGCKECLLPIESGKSSDNRNLHDALSRCGVMLTERKKTEFKARDLEEDLG
RLVKGSKEVVRDLVSTFEFAPGALGALLSYAELLADESNYENYIICRYNLDSYMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVDEINSRLDLVQAF
VEDTALRQDLRQHLKRISDVERLVHNLDKKRAGLQHIVKLYQSCIRLPYIKSALAGYEGQ
FSKLIKDRYLDPLELWTDDEHLNKFIALVETSVDLDQLENGEYMISPSYDTTLSALKEEQ
ESLEHQIHNLHKQTANDLDLALDKALKLDKGSQFGHVFRITKKEEPKIRKKLTTQFIVLE
TRKDGVRFTNTRLKKLGDQYQRKLEEYKSCQKELVDRVVRTTATFSEVFGSLAGMLSELD
VLLSFADLACSCPTPYTRPDILPSDEGDIVLEGSRHPCVEAQEWVNFIPNDCKLVRGKSW
FQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCVKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATH
FHELTALAHEIPDHGPHKKQTVGVANYHVSAHIDSSSHKLTMLYKVEPGVCDQSFGIHVA
EFANFPASVVALAREKAAELEDFSPAAIIPNNSQEEVGSVGSKRKRESDPDEISRGAARA
HQFLKEFSDLPLDKMDFKEALQQVKELKDGLQKDALNCQWLQQFF
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagaattttgaggagcagaacaagcttcctgagctcaaactagatgctaggcaa
gctcaagggtttctctcattcttcaagaccttaccacatgacccaagggctgtacggttc
tttgatcgcagggactactatactgctcatggtgaaaatgcaacgtttattgcaaagacc
tactatcgtactactacttccttgcgacaactgggtagcggatctgatgccctttcaagt
gttagcgttagtagaaacatgtttgaaacaatttcccgtgatcttctcctggagagaaca
gaccatacccttgaactctatgagggcagtggttcaaattggagattggtgaaaagtgga
actcctggaaatctcagcagctttgaagatgttttgtttgccaacaacgagatgcaggat
tcccctgttgtggttgcactatcacctaacttccgtgaaaatgggtgcactattggctta
ggttacattgatctgactaagagagtacttgggttggctgaatttcttgatgatagccac
tttacaaacttggagtcagctttggttgctcttggttgtaaggaatgccttttgcctatt
gagagtggcaaatccagtgataacaggaacttgcatgatgctttgagtaggtgtggtgtg
atgttaactgagaggaagaaaactgagttcaaagcaagggacttagaagaggatcttggg
aggcttgtcaaaggttcgaaagaagtggttcgagatttagtttctacatttgaatttgca
cctggtgcattgggggctttattgtcttatgccgaattacttgcagatgagagcaattat
gaaaattatattatctgtaggtacaatcttgacagctacatgaggttagattctgctgct
atgagggcactgaatgtcctggaaagcaaaacagatgcaaacaaaaattttagcttgttt
ggtctcatgaatagaacttgtactgctggaatgggaaagcgattattgcacatgtggcta
aagcagcctttattagacgtagatgagatcaactccagactggatttggtacaagcgttt
gtggaggatactgcacttcgccaagatctgagacaacacctgaaaagaatttcagatgtt
gagcggctagtgcacaatcttgataagaaaagagctggtttgcagcatattgtgaaactt
tatcagtcatgtataagacttccctatattaaaagtgccctggcaggctacgagggacag
ttttccaaactgatcaaggacaggtatttagatcccctcgagttatggactgatgatgaa
cacctgaataagttcattgcacttgtagaaacttcggttgaccttgatcaacttgagaat
ggggaatacatgatttctccaagttatgatactacactgtctgcattgaaagaagaacaa
gagtcactggagcaccaaatacataatttgcataaacaaactgcaaatgatcttgacctg
gccctagataaagctttaaagttagataagggctctcaatttggacatgtttttagaatt
acgaagaaggaggagccaaaaataaggaaaaagctcaccactcaatttattgtccttgaa
acccgaaaggatggagttagatttaccaatacaaggctcaaaaagctgggtgaccaatat
caaaggaagcttgaggagtacaagagttgtcaaaaagagctggttgaccgggtagttcga
actacagcaacattctctgaggtgtttggttctttagcagggatgctttctgagttggat
gtcttactaagttttgctgatttggcttgtagctgtcctactccttacacaagaccagac
atccttccatcggatgagggagatattgtcttagaagggagtagacacccttgtgtggag
gctcaagaatgggtgaattttataccaaatgattgtaaactagtcagggggaaaagttgg
ttccaaatcattaccgggcctaacatgggtggaaaatccacattcattcggcaggttggt
gtgaatgttctaatggcgcaagttggttcctttgttccatgtgtcaaagctagcatttct
gttcgtgattgcatttttgctcgggtgggtgctggtgactgccagttacgcggagtttct
acgtttatgcaagaaatgcttgaaactgcatcaatattgaaaggagcaacagataagtca
ttgataatcattgatgagttgggccgtgggacatcaacttatgatggatttggtttagct
tgggccatctgtgagcatcttgttgaagtgatcaaggcacctactctgtttgcaacccac
tttcatgaactgactgcactagctcatgaaattcctgatcatggtccacataagaagcaa
accgttggtgtggcaaactatcatgttagtgcccacattgactcatcaagtcacaagctg
actatgctgtataaggttgagccaggggtttgtgatcaaagttttggaattcatgttgca
gaattcgcaaactttcctgcaagtgttgttgcccttgctagagaaaaggcagctgaattg
gaagatttctctcctgctgcaatcattccaaacaattctcaagaagaggtgggatcggtg
ggatcaaaacgaaagagggagagtgatcctgatgagatctctagaggtgctgcacgagct
caccagtttttgaaagagttctctgatctcccattagacaaaatggatttcaaggaggcc
ctccaacaagttaaggaactgaaggatggcttacagaaggatgcacttaactgtcagtgg
ctccagcaattcttttag
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