Carya illinoinensis (pecan): 122296385
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Entry
122296385 CDS
T08745
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122296385
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cill01002
]
122296385
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122296385
03036 Chromosome and associated proteins [BR:
cill03036
]
122296385
Peptidases and inhibitors [BR:
cill01002
]
Metallo peptidases
Family M1
122296385
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122296385
Coactivators
SAGA/TFTC/STAGA complex
122296385
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
122296385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
Peptidase_M1_N
HEAT_2
Motif
Other DBs
NCBI-GeneID:
122296385
NCBI-ProteinID:
XP_042961951
LinkDB
All DBs
Position
15:33474754..33533230
Genome browser
AA seq
1369 aa
AA seq
DB search
MAKPRKPKNDDAKPENSGALVRHQKLCLSIDIDRRRIYGHTELEIAVPEIGIVGLHAENL
GIGSVLVDGEVAEFEYYPHQYHEESEKGLSAVLTPSSAADAAASAYITALERELVPNLLI
NCCKGFKNGSEQQPVTENGFHSSTEAKQQNARVIRIDYWVEKAETGIHFKDNVLHTDNQI
RRARCWFPCIDDSSQRCCYDMEFTVAQNLVAVSNGNLQYQVLSKDDPPRKTYVYSLNVPV
AAQWISLAVAPFEILPDHQFNLISHICLSANMPKLRNTMEFFHSAFSCYKDYLSVDFPFE
SYKQVFIEPEMAVSSVSLGASMSIFSSQALFDEKVIDQTIDTRIKLAYALARQWFGVYIT
PEAPNDEWLLDGLAGFLTDYFIKKNLGNNEARYRRYKANCAVCKADYSGATALSLSASCK
DLYGTQCIGLIGKIRSWKAVAIIQMLEKQMGPESFRNILQTIVSRAQDSTRTSRSLSTKE
FRHLANKVGNLERPFLKEFFPRWVGSCGCPVLRMGFSYNKRKNMVELAVLRGCTASPDSG
ASVLNINADSENRESDIGWPGMMSIRIYELDGMYDHPILPMAGDIWQLLEIQCHSKLAAR
RFQKPKKGSKPDGSDDNGDVMPALDMRSSSESPLLWMRADPEMEYLAEIHFNQPLQMWIN
QLEKDKDVIAQAQAVATLEALPQLSFSVVNALNSFLTDSKAFWRLRIEAAFALANTASEE
TDWAGLVHLVKFYKSRRFDANIGLPKPNDFHDFPEYFVLEAIPHAVAMVRAADKKSPREA
VEFILQLLKYNDNNGNTYSDVFWLAALVQSVGELEFGQQSVLFLTSLLKRIDRLLQFDRL
MPSHNGILTVSCIRTLTQIALKLSEFIPLDRVIELIRPFRDFKTIWQVRIEASRALLDLE
FHCKGIDAALSLFIKYLEEEPSFRGQVKLGVHAMRLCQISGGSDSNDNIKSEVLVSLLLL
LDGRIGFNNVFLRHHLFCIIQILAGRSPTLCGVPRETRTLLMGDAETSIEQKNIISSLVP
EMKLPDLPSDNLNHPEPPSNTLHPLETPPDIPNPSHEVLANPQASKEADTVSSGHERKMP
SIKIRVKQSAATSRTEDADNQTVEKSQGRQHETDHGASSSVSVDAPQRNFAEVVSISNQN
LEEVNSCHDHGSRMTASIGSAKPASDGDEIGKELQCTADSSKVSGLQSDVPLSSSFIQDN
NIDADAQKFASLQTLSVGRSGLEGGSLGLTDSSLHEKEKKKKKKKGKEKKRKREDHKERR
DDPEYLERKRLKKEKKQKEKEMAKLLSKETNSSSVEPTTKGEPRMKLAPAQLNPNEPSAS
DVVTKRVANERRGSDSLTKRVDVKPEASEGTSAAPKIRIKIKNRTLNKS
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcctcgcaagcccaaaaacgacgacgccaagcctgaaaattcgggagcccta
gtccgccatcaaaagctctgcctatccatcgacatcgataggcgccgaatctacgggcat
acggagttggaaattgctgttccagagattggtattgtagggttacacgcggagaatttg
gggattgggagtgttttggtcgacggagaggtggctgaattcgagtactacccgcatcag
tatcacgaggagagcgaaaaggggttgagtgcggtcttaacgccgagttcggccgcggac
gcagcggcgtctgcatatataacggctctcgaaagggaattggtcccgaatctgttgatt
aattgctgtaagggttttaagaacgggagtgaacagcagcccgtcacggagaacggtttt
cattcgtccacagaggccaagcaacagaatgcgagagtgattcgtattgattattgggta
gagaaggctgagacagggattcacttcaaggataatgtgctacatactgataaccagata
aggcgtgcgcggtgctggttcccttgtattgatgacagttcacagcgctgctgctatgat
atggagtttacggttgcccagaatcttgtggctgtcagcaatggaaacttgcaataccag
gttctgagcaaggatgatccccctcggaagacatatgtctatagtctaaatgttccagtt
gctgctcagtggatatctttggctgtggcaccatttgaaatccttccagatcaccaattt
aatctcatatcacacatttgcttgtctgcaaatatgccaaagcttcggaatactatggaa
tttttccatagtgcattcagctgttataaggattacctttcggtagactttccatttgag
tcatacaagcaagttttcatagaacctgagatggcagtatcctcagtaagtctgggggct
tccatgagcatctttagttctcaagcactatttgatgagaaggttattgatcagactata
gacacaaggattaaacttgcttatgcccttgcaagacagtggtttggtgtctatatcact
cctgaggcaccaaatgatgaatggctgctggatggccttgctggtttcttgacggattat
tttatcaagaaaaatttgggaaataatgaagcgcgttatcggcgatacaaggcaaactgt
gcggtttgcaaggcagattatagtggtgcaactgctttgagcctctccgcatcttgtaag
gatttgtatggaacccagtgcattggtctaatcggaaaaataagatcatggaaggctgtg
gcaatcattcaaatgttggaaaagcagatggggcctgagtctttccgtaatattttgcag
acgatagtttctcgagcacaggattcaactcgtacatccagatctctcagtacaaaggag
ttccggcatttggcgaataaagttggaaatcttgagcgtccttttctcaaagagtttttt
cctcggtgggtgggttcgtgtggttgtccagtgctgaggatgggattctcctataacaaa
cggaaaaatatggttgaattggcggtgttacgtggatgcactgcttcaccagattctggt
gcttcagttcttaatattaatgctgattcagaaaaccgagagagtgacattggttggcct
gggatgatgagcatcagaatttatgagcttgatggtatgtatgaccatccaattttgccg
atggctggagatatatggcagctattagaaatacaatgccattcaaagcttgctgctagg
cgcttccagaagcccaaaaagggttcaaaacctgatggctctgatgataatggtgatgtt
atgccggccctagatatgcgctccagttcagaatctcccttgttatggatgagagcagat
cctgaaatggaataccttgctgaaattcattttaatcaacctttacagatgtggattaat
cagttagagaaggacaaagatgttattgctcaggcgcaagcagttgcaacactagaggca
ttgccgcagctttcattttctgttgttaatgctctgaatagtttcctcactgactccaag
gccttctggagacttcgaattgaggcagcttttgcattagctaatacagcatctgaggaa
actgattgggctggtttagttcatttggtgaaattttataaaagtaggaggtttgatgca
aacattggactccccaagccaaatgactttcacgattttcctgagtactttgttctcgag
gccataccacatgctgtagctatggtcagagctgcagacaagaaaagtccaagagaagct
gttgagtttatattacaacttttgaagtataacgacaacaacggtaatacttactctgat
gtgttctggcttgctgcactggtccagtcagtcggtgagcttgaatttgggcaacagagt
gttctatttttaacatctcttctcaagcgcatcgacagacttttacaatttgacaggctg
atgcctagccacaatgggatcttaacagtcagttgtatccggaccctgacacagattgca
ttaaagctttcagagttcatacctcttgatcgtgtcatagaacttataagaccttttcgg
gatttcaagacaatatggcaagttcgaattgaagcaagtagggcacttcttgatctagaa
ttccactgtaaaggcattgacgcagctttgtcattgtttataaaatatttagaggaagag
ccatctttcagagggcaggtgaaattgggtgtacatgctatgcggttatgtcagataagt
ggtggatctgattctaatgataacataaagagcgaggttcttgtgtctttacttctccta
cttgatggtcgtattgggttcaacaatgtttttcttcggcaccacttgttctgcattata
caaatccttgcaggaaggtccccaactctatgcggagtgcccagagaaactagaacattg
cttatgggtgatgcagaaacttccattgaacagaagaacattatttcatctcttgttcct
gaaatgaaacttcctgacttaccttctgataacctgaaccatccagaaccaccttctaac
acgctgcatcctctggagacacctcctgacatcccgaacccttcacatgaagttttggct
aatcctcaggcttccaaggaggcagacactgtttccagcggtcatgaacgtaagatgcca
tctattaaaatcagggtcaagcaatctgctgccaccagtagaactgaggatgctgataac
caaactgtcgagaaatctcagggtaggcaacacgaaactgatcatggggcaagtagttct
gtgtctgtggatgcaccccaaaggaattttgcggaggttgtaagcatcagcaaccaaaat
cttgaggaagtaaactcatgccatgatcatggttctcgaatgactgccagcattggtagt
gcaaaacctgcaagtgatggtgacgaaattggaaaagaactccagtgcactgcagattca
agcaaagtttcaggacttcagtctgatgttccattatcatctagcttcatccaagataac
aatatagatgctgatgcgcaaaaattcgcatctcttcaaactctttcagttggtagaagt
ggtcttgagggtggttcacttggcttgacagactcttctctgcatgaaaaggagaagaag
aagaaaaagaagaaaggcaaggaaaagaaaaggaagcgtgaagaccataaagaacgccga
gatgaccccgagtatttggaacgcaagcgattgaagaaggagaaaaagcagaaagaaaag
gagatggcaaagctactgagcaaggagactaattcgtcttctgtagagccaactacgaaa
ggggaacctagaatgaagttggctcctgcacaattgaatccaaatgaacccagtgcatct
gatgttgtgaccaaaagggttgcaaacgaacgccggggatcagatagtttgacaaaaagg
gttgatgtcaaacctgaggcatcggaaggcacttctgctgctccgaaaattcgaattaaa
ataaaaaaccgaacgcttaacaaatcatag
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