KEGG   Carya illinoinensis (pecan): 122296440
Entry
122296440         CDS       T08745                                 
Name
(RefSeq) uncharacterized protein LOC122296440 isoform X1
  KO
K10801  methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    122296440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cill03036]
    122296440
   03400 DNA repair and recombination proteins [BR:cill03400]
    122296440
Chromosome and associated proteins [BR:cill03036]
 Eukaryotic type
  Heterochromatin formation proteins
   MBPs (metylated DNA binding proteins)
    122296440
DNA repair and recombination proteins [BR:cill03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     122296440
SSDB
Motif
Pfam: HhH-GPD
Other DBs
NCBI-GeneID: 122296440
NCBI-ProteinID: XP_042962089
LinkDB
Position
15:complement(24061052..24066574)
AA seq 914 aa
MAETEEEASFWRESSPGGDGASMSLGMKKRKRKSLKREKQAFLHPTTTKETPNAVSSFIL
SGSASTAMPLQSHTHNPNLNLTHDYGISSHAHYQQHPQIEASSHGDYFDNPHVNLSSDCY
NYTKDNHMEENNMKKKRKRKTKSKTSSSKKDVEEVEESRYHLFQEELSYDPPTNENVRNE
TEEESNSKNSRNGCANRWVGIDLQSPINPLCKDIDLSSDGNIFTSSTGDSVVTEYFRDGN
RLKHVRKKTKNKNNRGERDDKTSSKLIKSEEIPLSLQKFEDVLSRYIYKGNGGTNSLKKG
HHNDEEEKKSSKEPTSQCKMTKDSSILAIERGRKLAGQVDSDAVVVPTIYTNLKEEVQRT
GPGIGEAVCYKRRGVKGKQQTIAHLEVQNASPYFQRSSGQQVLTNDGNTTKMKSTGPRSK
TSAACAKVSRFFLKMPQKEEGSDLVCDRQKKESSHQNGLGIGDIVHGKRRRVIGKQQTIA
HTEARKASPCFQKSTGQQMLRNDGNGTQMKSTGPHSKTSEFSANVSRFFQKMPEKEEGSD
LVCSRQKKESSSQIKSGIHPSDGKQILTLEDVLSQYIYKSNGISKKVKNGQHKGEEEKKY
SEEPTSSSNMTNPPSIIDIDGGRNSAEHVDGEAVVAPRIYTNLKEEEMQQNGPGIEKVDS
CKQRRRKEKQQIIAHTEVQKLSPYLQSSTGQQVLRNGSNDTQIKTRRPCAKTSATAVKVT
SRYFQKMPEEEENADGILLGGKKARKQSVRGKTVLSTLQKRFDAYRRKSPDNMWKPPRSR
YGLLQEDHADDPWKVLVICMLLNRTTGSQAGKILSDLFTLCPDAKTATEVPAKEIEKIIQ
PLGLQKKRTEMIQRFSQDYMGDTWKYVTDLYGVGKYAADAYAIFCTGKWDRVRPTDYMLN
YYWEYLFSIRDTLL
NT seq 2745 nt   +upstreamnt  +downstreamnt
atggcggaaacagaagaagaggcgtcgttttggagggagagctcgccaggcggagacgga
gcgagcatgagtctgggcatgaagaaacggaagaggaagagtttgaagagggaaaagcag
gcatttcttcatccaactacgacgaaagaaaccccaaatgcagtaagttctttcatactc
tctggctcggcttcgactgccatgccccttcaatcacatacacacaaccccaatctcaat
ctcacccatgattatggtatttcttcccatgcccattaccagcaacatcctcaaatcgaa
gcttcctcacatggtgattatttcgataaccctcatgttaatctatctagtgattgctac
aattataccaaagataatcatatggaagagaacaatatgaagaagaagaggaagaggaaa
acgaagagtaaaactagttctagtaagaaggatgtagaagaagtagaggagtcgaggtat
catctcttccaagaggaactgtcatatgatcctccaactaacgaaaatgtgcgaaatgag
actgaagaagaaagtaatagcaagaatagcagaaatggatgcgccaatagatgggtcggc
attgacctacaatctccgattaacccactatgcaaggatattgatttatcaagtgacggc
aacatatttacatcgagtactggagattcagttgtaacagagtattttagagatggtaac
cggctgaagcacgtgagaaagaagacgaagaataagaacaataggggggaaagggatgat
aaaactagcagcaagcttatcaagtcagaggagattccactgagtttgcagaaatttgag
gatgtcctttcgcgatatatttacaagggtaatggaggtactaacagcttaaagaaaggc
catcacaatgatgaggaggagaagaaatcttccaaggaacccacttcccaatgtaagatg
accaaagattcctccattctagctatcgaacgtggcaggaaattagctgggcaggttgac
agtgatgctgttgtagtgccaacaatttacacaaacttgaaagaagaagtgcagcgaact
gggccaggaattggtgaggctgtttgttacaagcgaaggggagttaaaggaaaacagcaa
acaattgctcaccttgaagttcaaaatgcctccccatatttccagaggtcatcaggacaa
caagtgttgacaaatgatggaaatactacaaaaatgaaatcaacaggacctcgttcaaaa
acttctgctgcttgtgcgaaggtctcccgcttcttcctaaagatgccccaaaaagaggaa
ggtagtgatttggtttgcgataggcagaaaaaagaatcaagtcaccaaaatgggctagga
attggggatattgttcatggcaaacgaaggagagtaatcggaaaacagcaaacaattgct
cacactgaagctcgaaaggcctccccatgtttccagaagtcaactggacaacaaatgttg
agaaatgatggtaatggtacacaaatgaaatcaacaggacctcattcaaaaacttctgaa
ttttcagcgaatgtctcccgtttcttccaaaagatgcccgaaaaagaggaaggtagtgat
ttggtttgcagtaggcagaaaaaagaatcgagtagccaaataaagagcgggattcatcca
tctgatggaaagcagattttgacgcttgaggatgtcctttcacaatatatttacaagagt
aatggcatatccaagaaagtaaagaatggccagcacaaaggtgaggaggaaaagaaatat
agtgaggagcccacgtcttcatctaatatgactaatcccccctccattatagatattgat
ggtggtaggaactcagctgagcatgttgatggtgaagctgttgtagcaccaagaatttac
acaaacttgaaagaagaagaaatgcagcaaaatgggccaggaattgaaaaggttgatagt
tgcaagcaaaggagaagaaaggaaaaacagcaaataattgctcacactgaagttcaaaag
ctctccccgtacttacagagttcaacaggacaacaagtgctgagaaatggcagtaatgat
acacaaatcaaaacaagaagaccatgtgcaaaaacttctgctactgcagttaaggtcact
tcccgctactttcaaaagatgccggaagaagaagaaaatgcagatggcattttgttggga
ggtaaaaaggcgcgtaaacaaagtgtgagaggtaaaacagttctatctactttacagaaa
agatttgatgcttaccgaagaaaaagtccagataacatgtggaagcctccacgctccaga
tatggtcttctccaagaggatcatgctgatgacccttggaaggtattggtgatatgcatg
ctcctaaatcggacaactggttcgcaggctggaaagattctatcagatctctttacactt
tgtcctgatgcaaagacagctactgaagtccctgcaaaggagatagaaaagattatacaa
cctctaggtctacaaaaaaagaggacagagatgatacagcgcttctctcaggactacatg
ggagatacctggaaatacgtgacggatctgtatggtgttggcaaatatgcagctgatgcg
tatgcaatattttgtactggcaagtgggaccgggtgagacctactgattacatgctaaat
tattactgggaatatctcttcagtattagagatacattattatga

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