Carya illinoinensis (pecan): 122297178
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Entry
122297178 CDS
T08745
Name
(RefSeq) zinc finger CCCH domain-containing protein 16 isoform X1
KO
K14321
nucleoporin-like protein 2
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122297178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122297178
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122297178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_4
zf-CCCH_DUS3L
zf-CCCH_2
Torus
Motif
Other DBs
NCBI-GeneID:
122297178
NCBI-ProteinID:
XP_042963068
LinkDB
All DBs
Position
15:complement(45438..52027)
Genome browser
AA seq
404 aa
AA seq
DB search
MSFKKEPCRNFQRGHCQFGEACRYLHVTQQQPKSNVFGFGTQTGLNEQKKLNPFGFGTQT
GSHQQQKSNPFGFGVQSSSHPKVGTDFVSKQNQSKLFQNTWTRSTSTPTGVAPRKSDNET
QAANHKCTDPEACRRQIVEDFESERPLWKLTCYGHSKNAPCDIVGDISYEELRAAAYDDA
KHGLNFQSIVERERNLLSSKLVEFDNLLRKPYAVLPSRSSSQTPFSGARPNSFPPTAQNS
APPLVSSFNQLGASQNLGLGIRPFTPSNNAFVQLNANPYSSQASNAFGTNNLPHRSEGAF
NGQIPAQTPGSSFTSNIAGFNNGDNMNAGSTSRAAAAQISNSSSNHSPVVRNGPNFSAGE
PANTNVQFMNNLQTEDVSGNSSVWLKEKWNPGEIPEEAPPDAFI
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttaagaaagaaccctgcagaaactttcagcgtggtcattgtcaattcggcgaa
gcgtgtagatatcttcatgtgactcagcaacagccgaaatctaatgtctttggatttggg
acccaaactggtttaaatgaacagaaaaagttaaatccttttggatttgggactcaaaca
ggctctcaccaacagcagaagtccaatccttttggctttggtgttcagagcagttctcac
ccaaaagtgggcacagattttgtatccaaacagaatcaatccaagctttttcaaaataca
tggactcgttccacctccacacctactggtgttgccccacggaaatctgataatgagact
caagctgcaaatcataagtgcactgaccctgaggcttgcagacgccaaattgtagaagat
tttgagtctgaaagaccactttggaagctaacctgctatggtcattcgaaaaatgcacca
tgtgacattgttggtgatattagctatgaagaattgcgggcggcagcatatgatgatgct
aagcatgggttgaattttcagtcaatagttgagagagagaggaacttactcagttccaag
ttagttgagtttgataacctcctccgtaagccatatgcagttctaccgagccgttcttct
agccaaaccccattttctggggccagacccaattcatttccaccgactgctcaaaatagt
gcccctcctttggtctcaagctttaatcaactaggtgcatcacaaaatttgggtctcgga
attaggcccttcacaccatctaacaatgcttttgtgcaactaaatgcaaacccatattct
agccaggcatcgaatgcatttggaacaaacaatttgccacatagaagcgaaggtgcattt
aatggccaaattcctgcccagacacctggaagctcctttacatccaatatagcaggcttc
aacaacggtgataacatgaatgctggaagtacatctcgagcagcagctgctcaaatttca
aattcaagtagtaaccattcacctgtcgttcgaaatgggcccaactttagtgcaggtgaa
ccagcaaacacaaatgttcagttcatgaataacttgcaaacagaagatgtgtctgggaac
tcgagtgtttggttaaaagagaaatggaatcctggagagattccagaagaggctcctcca
gatgcatttatctag
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