KEGG   Carya illinoinensis (pecan): 122298494
Entry
122298494         CDS       T08745                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122298494
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cill03041]
    122298494
   03036 Chromosome and associated proteins [BR:cill03036]
    122298494
Spliceosome [BR:cill03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    122298494
 Complex B
    122298494
 Complex C
   U2 SnRNP specific factors
    122298494
Chromosome and associated proteins [BR:cill03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    122298494
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_MROH2B_C HEAT TPR_DNAAF5 HEAT_EF3_N HEAT_ECM29 TPR_IPO5 Htt_N-HEAT_1 HEAT_2 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N
Other DBs
NCBI-GeneID: 122298494
NCBI-ProteinID: XP_042964195
LinkDB
Position
16:307025..335410
AA seq 1269 aa
MDTDIAKTQEERKRLEQQLASITSLTFDTDLYGGNDRDSYVTSIPVTDDDENLDSMDNEV
ARKLASYTAPKSLLKEMPRGAGAEDDNDDGFGGFKKPQRIIDREDDYRKRRLNRVISPER
HDAFAAGEKTPDASVRTYADVMREEALKREKEETLKRIAKKKEEEEAAAKSDKATEDKGT
KRRNRWDQSQDDGAAAAKKPKTTSDWDLPEDATPGRWDATPTPGRLGDATPSASVGRRNR
WDETPTPGRLADATPAGGATPGATPAGMTWDATPKISGLATPTPKRQRSRWDETPATMGS
ATPMAGATPAAAASFTPGITPVGGVELATPTPGAINLRGNITPEQYNLLRWEKDIEERNR
PLTDEELDAMFPQEGYKILEPPASYVPIRTPARKLLATPTPLGTPLYSIPEENRGQQFDV
PKEAPGGLPFMKPEDYQYFGALLNEDDEEELSPDEQKERKIMKLLLKVKNGTPPQRKTAL
RQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILV
VIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVA
SALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLLD
ENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPL
MDALYASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRNDILPEFFK
NFWVRRMALDRRNYRQLVDTTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVV
ANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVKPYLPQICGT
IKWRLNNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILG
ALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREW
MRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVA
IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLED
ALMDRDLVHRQTAASAVKHMALGVAGLGCEDALIHLLNYVWPNIFETSPHVINAVMEAIE
GMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPVLEDEQNNVY
SRPELMMFV
NT seq 3810 nt   +upstreamnt  +downstreamnt
atggacacggacattgccaagactcaggaagagcgaaagcgcttggagcagcagctggct
tccatcacctccctcacgttcgacaccgatctttacggcggcaacgaccgcgattcctac
gtcacctccatccccgtcaccgacgacgatgagaacctcgactccatggacaacgaggtc
gcgcgcaagctcgcttcttacaccgcccccaaatccctcctgaaagaaatgccccgtggt
gcaggagccgaagacgacaacgacgacggttttgggggcttcaagaagccgcagcgaatc
atcgaccgcgaggacgattaccgcaagaggcgactcaatcgggtgatctcacccgagagg
cacgacgccttcgccgcgggggagaagactccggacgcctccgtgagaacctacgcagat
gttatgagggaggaggctttaaagagggaaaaggaggagacactgaagaggattgcgaag
aagaaggaagaggaggaggctgctgccaagtctgataaggctacggaggataagggaacc
aagaggaggaataggtgggaccagtcgcaggacgatggggctgccgctgcgaagaagccg
aaaactacgtcggattgggatttgcctgaggatgctactccggggcggtgggacgcgact
cccacccctgggaggttgggcgatgccaccccatcggcgtcagttgggaggagaaatagg
tgggacgagacgccaactcctggcagattggcggatgccacccctgccggtggggctact
ccgggagcgaccccggcggggatgacctgggacgccaccccgaaaatctcgggcctcgcc
acgcccaccccaaaacggcagagatcgaggtgggacgagacgcctgctaccatgggcagt
gcaaccccaatggcaggggccactccagcagctgcagcgtcgtttacaccggggattact
cctgtcggtggtgttgagctagcaacgccgacgccaggggctatcaatttgcgtggtaac
atcaccccggagcagtacaatttgctgaggtgggagaaggacatcgaggagaggaaccgg
ccactgacggacgaggagttggacgccatgtttccgcaggagggttataagattttggag
ccgccggcgtcctatgttcccattaggactcccgcaaggaagctgctggcgacccccact
cctttggggactcctctgtattccatccccgaagagaatcgcgggcagcagtttgatgtg
cccaaggaagccccgggtgggttgccgttcatgaagcccgaggattaccagtactttggg
gcgttgttgaacgaggacgatgaggaggagttgtcccccgatgaacagaaagagcggaag
atcatgaagctcctgcttaaggtcaagaatgggacgcccccacagaggaaaacggcattg
cggcagcttacggataaggcaagagagtttggggccgggccgttgtttaaccggatcctg
ccgctgctcatgcaacccactttggaagatcaagagaggcatctcttggtgaaggtgatc
gacagggtgctctataagttggatgagctggtacgtccttacgtgcataagattcttgtt
gtgattgaaccgttgttgattgatgaggattattatgcgcgtgttgaagggcgagagatt
atttccaatcttagcaaagccgctggcttggccaccatgattgctgccatgcgtcccgat
atagataacatcgatgagtatgtgaggaacaccactgccagagctttcagcgttgttgct
tctgctctcgggattcctgctctgttgcccttcttaaaggccgtgtgtcagagtaagaaa
tcgtggcaagctcggcacacagggattaagattgttcagcagattgccatattgattggt
tgtgccgtgcttcctcatctgaggtctcttgtggagatcatagagcacggtctgctggac
gagaatcagaaggtgaggacaatcactgcgttgtctctggctgctcttgccgaggctgct
gccccttatggtatcgagagcttcgactcggtgttgaagcctttgtggaagggtatcagg
tcgcaccgtgggaaagtcttggctgcgttcttaaaagccatcggttttatcatcccgctc
atggatgcactatatgccagttactacaccaaggaagtcatggttattctgattcgtgag
ttccagtcgcccgatgaagaaatgaagaagattgttctgaaggtggtgaagcagtgtgtg
agtacggagggtgtggaggctgattacattcgcaatgatattcttccggagttctttaaa
aatttctgggtcaggaggatggctttggataggagaaactacaggcagctggtggacacg
accgtggagatagcaaacaaagtcggtgttgccgatatagttgggagaattgtggaggat
cttaaagatgagagtgagccttacagacgaatggttatggagaccattgagaaggtagtt
gccaacttgggtgcatctgatatcgatgctcggttggaggaacttcttattgatggaatc
ctttatgccttccaagagcagaccagtgatgatgccaacgtgatgcttaatggttttggt
gcggttgtgaatgcacttgggcagagagtgaaaccgtaccttccccagatttgtggcacc
ataaaatggcggttgaataacaagagcgcaaaggtgagacagcaagcagcggatctgata
tcgaggattgctgtggtgatgaagcagtgccaggaggaacaactgatgggtcaccttggt
gttgtactgtatgagtatctgggagaggagtatcccgaggtcctgggatctatcctagga
gctctcaaggcaattgtcaatgttattggtatgacaaagatgactcctcctataaaggat
ttgcttcctagactgacaccaattttgaagaataggcacgagaaagtccaggagaactgc
atagaccttgtcggacggattgctgaccgcggggctgagtttgttccggctagggagtgg
atgaggatttgcttcgagcttctcgagatgcttaaagcccacaagaagggtatacggcga
gccactgtgaacacctttgggtatattgccaaggccattgggccacaggatgtcctggct
accctgttgaataatctcaaggtgcaggagcggcagaaccgtgtgtgcacaactgtggca
attgctatagttgcagaaacctgttcgccctttacagttcttccagctttaatgaatgag
tatcgcgtgccagagcttaatgtgcaaaatggtgtcctgaaatccctctcttttctgttc
gagtatattggggaaatgggaaaagactacatctatgctgtgaccccattacttgaggat
gccctcatggatagggatttggttcacaggcagactgcggcttctgctgttaagcacatg
gccttgggggttgctggtttgggttgcgaggatgctttaatccacttgctcaactatgtg
tggccaaacatttttgagacttccccgcacgtgataaatgctgtaatggaagccattgaa
ggaatgagggtggccttgggtgctgctgttgttctaaactactgccttcaggggctgttt
catcctgctcgtaaggttagggaggtgtactggaagatttataactcgctttatattgga
gcacaagatgctcttgtggcggcttatcctgtgctggaggacgagcagaacaacgtatac
agtaggcctgagttgatgatgtttgtctga

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