Carya illinoinensis (pecan): 122298569
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Entry
122298569 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122298569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122298569
03036 Chromosome and associated proteins [BR:
cill03036
]
122298569
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122298569
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122298569
mRNA degradation factors
5'-3' decay
Decapping complex
122298569
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122298569
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Mdt30
TFIIA
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
122298569
NCBI-ProteinID:
XP_042964315
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All DBs
Position
2:5236998..5252213
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AA seq
500 aa
AA seq
DB search
MNNNRGRYPPGIGPGRGGGGGMNLNPAFQSRVPQQQYVQRGFMQQQNHHHQQQHQQQYHH
QQQQQQQQQWLRRAQLGGSDSIVDEVEKTVQSEAADSSSQDWKARLKIPPPDTRYRTEDV
TATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAF
CIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR
LYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIRFMPANR
QILMFSATFPVTVKDFKERYLQRPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSK
LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT
DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ
ELGTEIKQIPPHIDQAIYCR
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaatagaggaaggtatccgccagggatcggccctggccgaggcggaggcgga
ggcatgaatctaaacccggccttccagtcgagggtccctcaacaacagtacgtacagagg
ggctttatgcagcagcagaaccatcaccaccaacaacagcaccagcagcagtatcatcat
cagcagcagcagcagcaacaacaacagtggcttaggagggctcagttgggtggttccgat
tcaatcgtcgacgaggttgagaagactgtgcagtccgaggccgccgactcaagttctcaa
gattggaaggcaaggctaaagataccgccacctgatacacgctatagaactgaggatgtg
acagcaactaagggaaatgaatttgaggactactttctgaagcgcgagttgcttatggga
atatatgaaaaggggtttgaaagaccatctcccattcaggaagaaagtattccaattgct
ttaacagggagtgatattctagctagagcaaaaaatggaaccgggaaaactgctgcattt
tgcattcctgcattggaaaaaattgatcaggataacaacgttattcaagttgttatactt
gttccaactcgagagttggctcttcaaacatcacaagtttgtaaagaacttgggaagcat
ttgaatatccaagttatggtaacaacaggtggtaccagcttaaaggatgatatcatgcgt
ttatatcaaccggttcatttactggttggaactcctggaagaatcctagatcttgcaaaa
aaaggtgtttgcattttgaaagattgttctatgcttgttatggatgaggctgataagctt
ctttctccggaatttcaaccatcaatagagcagctaattcgatttatgcctgcaaaccgt
caaattttgatgttttcagcgacatttcctgttacagtcaaagacttcaaagaaagatat
cttcaaaggccatatattattaaccttatggatgagcttacgctcaagggtatcacacaa
ttctatgcttttgttgaagaaagacagaaagtccactgcctaaatactcttttctccaag
ctgcaaataaaccaatcaattatattctgcaattctgtgaaccgggttgagctgttggcg
aagaaaattacagaacttggctattcttgtttttacattcatgcaaagatgctacaagac
catcgtaacagagtatttcatgacttccgcaatggtgcatgcaggaatcttgtttgcact
gatctatttacaaggggaattgacattcaagcagtcaatgtcgttattaactttgatttt
cccaagaactcagaaacatatctgcacagggttggacgatctggaaggtttgggcacctt
ggtttagccgtgaatttgatcacctatgaggatcgctttaacctgtataggattgagcaa
gaactcgggactgagataaagcaaattccaccacatattgatcaggcaatttactgtcgg
tga
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