Carya illinoinensis (pecan): 122298955
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Entry
122298955 CDS
T08745
Name
(RefSeq) ATP-dependent helicase BRM-like isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122298955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122298955
03036 Chromosome and associated proteins [BR:
cill03036
]
122298955
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122298955
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
122298955
Chromatin remodeling factors
BAF complex
122298955
PBAF complex
122298955
GBAF(ncBAF) complex
122298955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
QLQ
DEAD
Bromodomain
AAA_14
HDA2-3
Motif
Other DBs
NCBI-GeneID:
122298955
NCBI-ProteinID:
XP_042964732
LinkDB
All DBs
Position
2:6089908..6113370
Genome browser
AA seq
2258 aa
AA seq
DB search
MQSGGGGGGGPSRMGPAGRAASTSSAASPSSSSSAVSTPHLGFDSMQQQMGSRQSLQQQL
HRKTEGNEALLAYQASLQGVMAGNNFNSSPGSMQLPQQSRKLIELAQQHGSSHEGPHRSQ
AVEPQLLNPVHQAYLQYAFQAQQKSALALQSQQHAKMGMLGPPSGKDQGMRMGNPKMQDL
IAMQAHTQAQVSTSKNSSEQFGRGEKQMDQGQQSASEQGTEPKPSTQATGIGQLIPGNMV
RPLQASQAQQNIQNMANNQLTMSAQLQAMHSWALERNIDLSLPANANLMAQLIPMIQSRM
VTQQKANESNMGAQSTSVPLSKQQVTSPPVASESSPHANSSSDISGQSGSAKARQTVSPS
PFGSTSNAGTVKHANNTALQQFSTHGRENQVPSRQPAVIGNGMPPMHPPQSSPNMSQGVD
HSSSVKNSVSSPEALQMQYLRQSNRTSPQAVVHTNDGASGNNIISQGGSTIQTPQQRFGF
TKQQLHVLKAQILAFRRLKKGDPGLPQELLRAIAPPPLELQLQQKLPPTGGNNQDKSDGN
IVADYPRHMESNEKTTHAVTSINGQSFLTEEAFGGEEKATVTTAYMQGVPVVMKDPPPVV
SAGKDEQQSSVHSVKSDQDVEHGIHRPPVRSDFPADRGKSIAPQGAVSDAAQVKKPAQPS
TAPQPKDSGSTRKYHGPLFDFPFFTRKHDSFGSAMMVNNNNHLPLAYDVKDLLFEEGMEV
LTKKRSENLRKIGGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDRQARLRDEIDQQQQEI
MAMPDRPYRKFVRLCERQRMELTRQVQASQKAVREKQLKSTFQWRKKLLETHWAIRDART
ARNRGVAKYHERMMREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGEAAERYA
VLSSFLTQTEEYLHKLGNKITAAKNQQEVEEAANAAAVAARLQGLSEEEVRAAAACAGDE
VMIRNQFMEMNAPKDSSSVSKYYTLAHAVNERVVRQPSMLRTGTLRDYQLVGLQWMLSLY
NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHSWLPSV
SCIYYVGGKDQRSKLFSQEVSALKFNILVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKD
RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQK
EAPMQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQ
SAIYDWIKSTGTLHVDPEDEMRRVEKNPNYQAKVYRTLNNRCMELRKACNHPLLNYPYFN
DFSKDFLVRSCGKLWIMDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDG
TTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVA
RAHRIGQTREVKVIYMEAVVDKISSHQKEDELRNGGTVDMEDDLAGKDRYMGSIEGLIRN
NIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIA
RSKEEVELFDQMDEELDWAEDMTRYDEVPKWLRASTREVNSTVAALSKRPSKNTLLASNV
GMESSEVGSDSSPKTERKRGRPKGRTNPNYKELDDENGEYSEASSDERNGYSIHEEEGEI
GEFEEDEFGGAVEAPLINKDQSEEEGPVCGGEFEYPQASESTKNNPMLEEAGSLGSSSDS
QRLTQMVSPSVSSQKFGSLSALDARPGSLSKRLPEELEEGEIAVSGDSHVDHQQSGSWIH
DRDDGEEEQVLQPKIKRKRSLRVRPRHTMERPEEKSGNEIQSFEHGDSSLLPLQVENKYQ
AQLRADPGTKPYGESSASKYDQNDSSSKIRRNLPSRRIANASKLHASPKSSRLNCVSAPA
EDAAEQSRESWDARVMDSRGTKTLATKMPDSIQRRCKSVISKLQRKIGKEGPQIIPLLTD
LWKRIENAGYAGASGNNILDLRKIDQRIDKLEYNGVMELVFDVQFMLKSAMHFYGFSYEV
RSEARKVHDLFFDILKIAFPDTDFREARNALSFSGTFSTTSAPSPRQATVGPSKRQKLVN
EVEPDTCLPQKVLQRGKISSGEDSRIRSHIPQKDSRLGAGIGGSREQCQQDDPPLLTHPG
ELVICKKKRKDREKSVVKPRTGSVGPVSPPSMGRGMRSPGPSSVPKETRQTQQTTHPQGW
TNQPGPAQPTNGDGGTVGWANPVKRLRTDSGKRRPSHV
NT seq
6777 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccggtggtggaggtggcggtgggcccagccgaatgggcccggcagggcgggcg
gcatcaacttcatctgctgcgtcaccgtcctcgtcctcctcggccgtgtccacgcctcac
ttggggttcgattcgatgcagcagcagatggggtccaggcagtcattacaacaacagttg
catagaaaaactgaaggcaacgaagcccttctagcatatcaagctagtctacaaggagtt
atggcagggaacaattttaattcatcgcctggttccatgcagctgcctcaacagtctagg
aaactcattgagttggctcaacagcatggttcctctcatgagggcccacataggagtcaa
gctgttgagccacaattgctaaatccagtccatcaagcttatcttcagtatgctttccag
gctcaacaaaagtcggctctggccttgcagtcacagcagcatgccaagatgggaatgtta
ggccctccatctgggaaggaccagggcatgcgaatgggaaatcctaaaatgcaggatctc
attgccatgcaggcacatactcaggctcaggtgtcgacatcaaaaaactcatctgaacaa
tttggtcgtggtgaaaagcagatggatcaaggacagcaatcagcctctgagcaggggact
gagccaaagccttcaacccaggcaacaggtattgggcaattaatacccggaaatatggtg
aggcctttgcaagcatctcaagctcagcagaatatccaaaatatggcaaacaaccagctc
acgatgtctgcccagttacaggcaatgcattcgtgggcacttgagcgtaatattgatctc
tcactgcctgcaaatgccaacttgatggcgcagctcattccaatgatacaatctaggatg
gttacacagcaaaaagcaaatgaaagtaacatgggtgcacaatcaacatctgttccattg
tcaaaacagcaggtcacctctccaccagttgccagtgagagttctccccatgctaattca
tcaagtgatatatctggtcagtctggatctgcaaaggctaggcagactgtttctcccagc
ccttttggttcaacgtcaaatgctggcactgtcaaacatgctaacaacactgcattgcag
cagttttctacacatggcagagaaaatcaggtcccttctagacagcctgctgtgattggt
aatggaatgcctccaatgcatcccccacagtcatctcccaacatgagccagggcgttgat
cattcttctagtgtgaaaaattcagtaagtagccctgaagcactgcagatgcagtacctc
aggcaatcaaatcgaacttctccacaagctgtagttcacactaatgatggggcctctggc
aacaatatcatttcacaaggtggatcgaccattcagacacctcagcagcgctttggattc
accaagcagcaattgcatgttcttaaagcacaaatcctagcatttagacggctaaagaaa
ggagaccctggtctcccccaagaacttcttcgagcgattgctccacctccccttgagctt
cagctgcagcagaaactgccccccacgggaggaaataatcaggataaatctgatgggaat
attgtggctgactatccgaggcatatggagtccaatgagaaaactacgcatgctgtcacg
tcaattaatggacaaagtttcctaacagaggaagcttttgggggagaagagaaagcaacc
gtcaccacagcttatatgcaaggtgtgccagttgtaatgaaggatcctccaccagtagta
tctgctggaaaagatgagcagcaatcctctgtacattctgttaagtcagaccaggatgtt
gaacatggtattcataggcctccagttagaagtgattttccagcagataggggaaagtct
attgcaccacagggagctgtatctgatgcagcgcaagttaagaaacctgcacaaccgagc
actgctcctcaaccaaaagacagtggatccaccagaaagtatcatggacccctatttgat
ttccccttcttcaccaggaaacatgactcctttggatcggccatgatggttaataacaat
aatcatctaccattggcatatgatgtcaaagaccttctctttgaggaaggcatggaagtg
cttaccaagaaaagatccgaaaatttaagaaagattggtggtctactggcagtaaactta
gagaggaaaaggattaggccggatcttgtcttgaggttgcaaattgaagagaaaaagctt
cgacttttagatcgacaggcccggttaagggatgaaattgatcaacagcaacaggagata
atggcaatgcccgacaggccatataggaagtttgtccgactgtgtgagcgtcagcgtatg
gaactcaccaggcaagtacaggcctctcagaaagctgtgagagagaagcaactgaaatcc
accttccagtggcgtaagaagcttcttgagactcactgggccatccgtgatgcacggact
gcacgtaataggggagttgccaaatatcatgagagaatgatgagggagttttcaaaaaga
aaggatgatgataggaataagaggatggaggcattgaagaataatgatgtcgaaagatat
agggagatgttgctggagcagcagacaagcatcccaggtgaggccgcggagagatatgct
gttctctcatcgttcttgactcagacagaagaatatctacataaactgggaaataaaata
actgctgccaaaaatcaacaggaggtggaggaggcagcaaatgccgctgcagtagctgca
cgattgcagggtctctccgaagaagaggttagggcagctgcagcatgtgctggggatgaa
gtaatgataagaaatcagttcatggaaatgaatgcacctaaggatagttcatctgttagc
aagtactatactcttgcccatgctgtgaatgaaagagttgtgaggcaaccctcaatgcta
cgtactggaaccttaagagactatcaacttgttgggttgcaatggatgctatctttatat
aacaataaattaaatggaatcttggcagatgagatgggtcttgggaagactgtgcaggta
atggcattgatagcttacttgatggagttcaaagggaactatggcccacatcttataata
gttccaaatgctgttctggtaaactggaagagcgagcttcatagttggctgccatctgtg
tcatgcatttattatgttggtgggaaggatcaacgatctaaattattttctcaagaggtt
tctgctctgaaatttaatatccttgtgacaacatatgagttcataatgtatgatcgttca
aaactctcaaaaattgactggaagtatatcataattgatgaagcacaacggatgaaggat
agggagtcggttttagcacgtgatcttgatagatatcgctgccagaggcgcctgctactg
actgggacaccattacagaatgatttgaaggaactctggtcactcttaaatctacttctt
ccagaagtctttgataatcggaaagcatttcatgattggttctcaaaaccctttcagaag
gaagctcctatgcagaatgcagaagatgactggctggagactgaaaaaaaggttatcatc
atccaccgacttcatcaaattctagagccctttatgcttaggcgtcgtgttgaagatgtg
gaaggctcacttccgcctaaggtttcgatagttttaagatgcaggatgtcagctattcag
agtgccatttatgattggatcaaatccactggtactcttcacgttgatcctgaagatgaa
atgcgcagggttgaaaaaaacccaaattaccaggctaaggtgtatagaactctaaataac
agatgtatggagcttcgtaaagcctgcaatcaccctttgctcaattacccatatttcaat
gacttctctaaggattttcttgtaagatcatgtggaaaattgtggatcatggataggatt
cttattaaacttcagagaacagggcatcgagtactgctctttagtaccatgacaaaactc
cttgatatattggaggaatacttgcaatggcgacggcttgtctacagacgaattgatgga
acaactagtttagaagatcgtgaatctgcgattgtggactttaatagcccagactctgac
tgcttcattttcttgcttagtattcgtgcagctggtagaggtcttaatcttcaatctgct
gacacagttatcatttatgatcccgatccaaaccctaaaaatgaggaacaggcagttgct
agagcccaccgtattggacagactagagaagtcaaagtgatttatatggaagcagtcgtt
gataaaatctctagccatcaaaaggaagacgaactaagaaatggaggtactgttgatatg
gaggatgaccttgctggtaaggatcgttatatggggtctattgagggcctgataagaaac
aacattcaacaatataaaattgatatggctgatgaggttatcaatgctgggcgttttgac
cagagaacaacacatgaagagagacgcctgacgctagagacattattgcatgatgaggag
aggtatcaagaaactgtccatgatgttccctcactgcaagaggtcaatcgcatgattgcc
aggagcaaagaggaagttgaattgtttgatcaaatggatgaagaactagattgggctgaa
gacatgacgcgttatgacgaggtacctaagtggcttcgagcaagtactcgagaagtaaat
tccactgttgcagctctttcaaaaaggccatcaaaaaacactttattggctagtaatgtt
ggcatggaatctagtgaagtgggttctgattcatctccaaaaactgagaggaaaagggga
cggcccaaaggaagaacgaatcctaattacaaggaactggatgatgaaaatggggaatac
tctgaagcaagttcagatgagagaaatggatactctatacatgaagaagagggagaaatt
ggagagtttgaagaggatgaatttggtggtgctgttgaggcaccgctaattaataaagac
caatcggaagaggagggtccagtttgtggtggtgagtttgagtatccccaggcttcagaa
agcacaaaaaacaaccctatgctggaagaagcaggttccttgggatcatcgtcagacagt
caaagattgacacaaatggtatcaccttccgtttcttcgcagaaatttggttccctgtct
gctttagatgctaggccaggttctctctcaaaaaggctgccagaagaactagaggaaggg
gaaattgcagtgtctggagattctcacgtggatcaccaacaatctggaagttggattcat
gaccgagatgatggtgaggaagagcaggttttgcaacccaaaataaaaagaaaacgcagt
cttagggtccgtccccgtcatacaatggagaggccagaggagaagtctggcaatgaaata
caatcttttgagcatggagattcatctctgttgccattgcaagtggaaaataagtatcaa
gcgcagttaagagctgaccctggaacaaaaccgtatggagagtccagtgcttctaagtat
gatcaaaatgactcatcctcaaaaattaggcgaaatttgccatcaaggagaatcgctaat
gcatcgaaattgcatgcttcaccaaaatctagcagattaaattgtgtgtctgcacctgca
gaagatgctgccgaacagtcaagagaaagttgggatgctagagttatggattcaaggggg
acaaaaacattggccactaagatgcctgacagcatccagagaaggtgcaagagtgtgatt
agcaagcttcaaaggaaaatcggtaaggaaggtcctcaaattatacctttgctaacagat
ttgtggaagaggattgagaatgctgggtacgcgggtgcatcgggaaataatatcttggat
ttacgaaagatcgatcagcgtattgacaaattggagtataatggagtgatggagcttgtg
tttgatgtgcagttcatgttgaaaagtgcaatgcatttttacggtttctcatatgaggtg
agatctgaagctaggaaagtgcatgatctcttttttgatatcttgaagattgcatttccc
gacacagattttcgagaagccagaaatgcgctctccttttcgggtacattttctacaact
tctgctccttccccaagacaagcaactgttggcccaagcaagagacagaaattggtaaat
gaggtggaacctgacacgtgccttccgcagaaggtactgcaacgtgggaaaatatccagt
ggggaagactcaagaatcagaagccatattccccagaaggattcaaggcttggggctgga
attggcggtagtcgggagcagtgtcagcaggatgatcctccacttcttactcatccagga
gagctggtaatctgtaagaagaagagaaaagaccgggagaaatcagtggtaaagcctaga
actggatcagttggtcctgtttcaccacctagcatgggtcgtggtatgagaagtccaggt
ccaagttcagtgcccaaggaaacgagacagacccaacaaaccacccatccgcaaggatgg
accaaccagcctggtcccgctcaaccgacaaatggggatggagggactgttggttgggca
aatcccgtaaagcggttgaggacagattctgggaaaagaaggccgagccatgtatga
DBGET
integrated database retrieval system
