Carya illinoinensis (pecan): 122299082
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Entry
122299082 CDS
T08745
Name
(RefSeq) guanine nucleotide exchange factor subunit RIC1-like isoform X1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cill04131
]
122299082
Membrane trafficking [BR:
cill04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
122299082
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RIC1
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
122299082
NCBI-ProteinID:
XP_042964943
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Position
2:6305151..6327658
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AA seq
1123 aa
AA seq
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MYMAYGWPQVIPLERGLCPSSQRIIYLKVINRLLLVVSPSHLELWSSSQHKVRLGKYKRD
SDSLQREGENLQAVWSPDAKLVAVLTSSFFLQIFKVQFTEKRIQIGGKQPSGLFLASISL
LLSEQVPFAENYLAVSNFVCDNKHLLVGLSNGSLYNISWKGEFYGSFVLDPRSRDSSKST
HPSNSLDNGFTSGGAPRVIIQDHNVSRTAAIIQLELNLPLRLLFVLYSDGQMVLCSVSKK
GLKQADSIKAERILGSGDAVCASVASEQQILAVGTRRGVVELYDLAESTPLIRTVSLYDW
GYSMEDTGSVSCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSVSSPMVKP
SQHSKYEPLMGGTSLIEWDEYGYRLYTIEEGSPERIVAFSFGKCCLNRGVSGTTYVRQVI
YGADRLLVVQSEDTDELKMLHLNLPVSYMSQNWPVQHVAASKDGMFLAVAGLRGLILHDI
RAKRWRVFGDITQEHKIQCKGLLWLGKIVVVCNYIDSSNMYELLFYPRYHLDQSSLLGRK
PLLAKPMVMDVYQEYILVTYRPFDVHIFHVKLLGELTPSSTPDLQLSTVRELSIMTAKSH
PAAMRFIPDQLPRDGIPNNQFSSSSALLLREPARCLILRANGDLSLLDLDDGHERELTNS
VELFWVTCGPEEKTNLIEEVSWLDYGHRGMQVWYPSPGIDPFKQEDFMQLDPELEFDREI
YPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKREEALRLA
QLSAEKPHFSHCLEWLLFTVFDTEITRQNINKHHVSGPKFANNSSLLEKTCDLIRSFPEY
FDVVVSVARKTDGRHWADLFSAAGRSTELFEECLQQRWYRTAACYILVIAKLEGPAVSQY
CALRLLQATLDESLYELAGELVRFLLRSGREYEQASTDSDRSSPRFLGYFLFHTSYRKQS
LDKSNSMKEQSAHVAPVKNILENHASYLMSGKELSKLVAFVKGTQFDLVEYLQRERHGCA
RLENFASGLELIGQKLQMGMLQSRLDAEFLLAHMCSVKFKEWIVVLATLLRRSEVLFDLF
QHDMRLWKAYSITLQSHLAFSEYHDLLEDLEEKLSSVANLEEK
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggcatatggctggccccaggtgatcccactggaacgagggctctgtccctct
tcccagcggatcatctacctcaaggtcatcaatcgcctattgctagtcgtctccccttct
catttagagctctggagctcttcccagcacaaagtaagactggggaagtacaagagggat
tcggattcgctgcagcgggagggagagaatttacaggctgtttggagccctgatgctaaa
ttagtcgctgttcttacatcatctttctttcttcaaatttttaaggttcagtttacagag
aaaagaatacagattggagggaagcaaccctctggtttgtttcttgcttctatatctctt
cttctgagtgagcaggtgccttttgcggaaaattacttggctgtgagcaattttgtatgc
gataataaacatttgctagttggactttctaatggatctttatataacatctcatggaag
ggcgagttttatggatcatttgtacttgatccccgctctcgtgacagcagtaaaagcact
catccatcaaattctcttgataatggtttcacttctggtggagccccgagagttattatc
caggaccataatgtttcaagaacggctgctattattcaattggagcttaatcttccattg
aggttgctatttgtgttatattctgatggacaaatggtgttgtgttcagtaagtaagaaa
ggattaaagcaagctgattctattaaagctgaaagaattttgggctctggtgatgctgta
tgtgcttcagtagcttccgaacaacaaatccttgctgttggcaccagaagaggggttgtt
gagttatatgatctggcagaatccacacctcttattcgtaccgtgtctttgtatgactgg
ggatattcaatggaggatactggctctgtcagttgtattgcatggacacctgataattca
gcttttgcagttgggtggaagttaagaggacttactgtctggtctgtttctgggtgccgt
ttgatgtcaacaatccgtcaaattggtttaagttctgtatcttctccaatggttaagcca
agccagcatagtaagtatgaacctttaatggggggcacctcactgatagagtgggatgaa
tatggatataggctttataccatcgaggaaggatctccggagagaattgttgcattttct
tttggaaaatgttgcctaaacagaggagtttcaggcacaacatatgtccgtcaagtgatt
tatggggcagatcgattgcttgttgtgcagtccgaggatactgatgaacttaaaatgcta
catcttaaccttccagtttcgtacatgtcccaaaattggccagttcaacatgtggccgcc
agcaaggatggaatgttcttagcagttgctggtctccgtgggttaatcttacatgatata
agggcaaaaaggtggcgagtctttggagatattactcaggaacataagattcagtgcaag
ggtttgttatggctggggaagatcgttgttgtctgcaactacattgattcttctaacatg
tatgagttgcttttttatcctagatatcaccttgatcaaagctcactgcttggtaggaaa
ccattgcttgccaaaccaatggtgatggatgtctatcaagagtacattcttgttacgtat
cgaccgtttgatgtccacatattccatgtgaagttattaggtgaattgacaccttctagc
accccagatttacagctttctacagtacgggaactctcaatcatgactgcaaagagccat
cctgcagccatgcgttttatccctgatcagcttccaagagatggcatcccaaacaatcaa
ttttcgtcctcttcggctctgttacttagagagcctgcgagatgtctgatactgagggcg
aatggagacctttcacttcttgacttggatgatggacacgaaagagagctcaccaactct
gttgaattattttgggtcacttgtggtccagaggagaaaacaaatctaatagaggaagtt
tcatggttagattatggtcaccgaggaatgcaggtttggtatccctctcctggtattgac
ccttttaaacaggaggatttcatgcagttggatccggagctggaatttgatcgcgagata
tacccactggggcttcttccaaatgctggtgttgttgttggtgtttcccagaggatgtca
ttttcagcatgcacagagtttccatgttttgagcctactcctcaagctcaaactatactt
cattgcctactacgacaccttcttcagagggacaaaagggaggaggctttacggttggcg
caattatctgcagaaaagcctcatttttcgcactgtctggaatggcttcttttcacagta
tttgacacagaaataaccaggcaaaacataaacaagcaccacgtttcaggccctaaattt
gctaacaactcatctcttctggagaagacctgtgatttgatcagaagtttcccagagtat
tttgatgtggttgtcagcgttgcaagaaaaaccgatggtcgacattgggcagatttgttt
tctgctgctggaagatcaacagagttgtttgaggaatgcctccagcagagatggtatcga
actgctgcttgttatatacttgtaattgctaaacttgaaggtcccgctgtcagtcagtac
tgtgctttacgtttattacaggcaacgcttgatgaatcattatatgagcttgctggggag
ctggtgaggttcttgttgagatctggaagggagtatgaacaggcatccacagattcagac
agatcatctcctagattcttgggctattttctattccatacaagttaccggaagcagtcc
ttggataaaagcaactcaatgaaagagcaaagcgctcatgttgctcctgttaagaatatc
ttagaaaaccatgctagttatttaatgtcaggaaaagaactttccaagcttgttgcattt
gtaaaaggcacccagtttgatttggtggagtatcttcaaagagaaagacatggatgtgct
cgcttggagaactttgcttcagggcttgaactgattgggcaaaagcttcaaatggggatg
ttacaaagccggttggatgcagaattcctcttggctcatatgtgctctgtcaagttcaaa
gagtggatagttgtattggctacacttctaagaagatctgaggttcttttcgatcttttc
cagcatgatatgcggttatggaaggcatatagcattaccctgcagtcgcatctggcattt
tctgaataccatgatctgcttgaagacttggaagagaaactttcatcagttgcaaatttg
gaagagaaatga
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