Carya illinoinensis (pecan): 122299167
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Entry
122299167 CDS
T08745
Name
(RefSeq) serine/arginine-rich splicing factor SR34A-like
KO
K12890
serine/arginine-rich splicing factor 1
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122299167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122299167
Spliceosome [BR:
cill03041
]
Common components
Common spliceosomal components
SR proteins
122299167
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Transformer
RRM_3
Motif
Other DBs
NCBI-GeneID:
122299167
NCBI-ProteinID:
XP_042965116
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All DBs
Position
16:23869050..23875913
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AA seq
258 aa
AA seq
DB search
MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRILDIELKIPPRPPCYCFVEFDNARDAED
AIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGGYGGGGGGGGSGGGRFGISRHSEFRVI
VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFR
NPWARGYIRVKKYEGSPPRSRSRSRSRSRSERRDRSISVERSISRSVSRSRSASPVKSSR
PRSRSRSGSPLQARSDSG
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtcgtttttctcgcacaatctatgttggaaacctgccctcagatataagagaa
tcagaaattgaagatctattctacaagtatggccgtatattggatattgaattgaagatt
ccgccccgccctccatgttattgttttgtggagtttgataatgctcgggatgcagaagat
gcaatcaggggtcgtgatggctataactttgatggttgtcgattgagggttgaacttgcc
catggcggtagagggccatcttcaagtgatcgtcgtggtggctatggtggaggcggcggc
ggcggcggcagtggtggtggccgatttggtatctcacgccattctgaatttcgagttatt
gtccgcgggctcccttcttctgcttcctggcaagatttgaaggatcatatgcggaaagct
ggtgatgtatgttttgcagaggtatcccgtgatagtgaagggacctttggcattgtcgat
tacactaattatgatgacatgaaatatgctattcggaagcttgatgacacagaattcaga
aatccttgggcaagaggttacattcgggtcaagaagtatgagggcagtcccccaaggagc
cgaagtagaagccgcagccgaagcagaagtgaaaggagggacaggagtatatcagtggaa
cgctctatttctagatcggtatcaagatccagatctgcatctcctgtcaaatcttccagg
ccacgatcaagatcaaggtcaggatctcctctccaggcacggtccgatagtggctga
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