Carya illinoinensis (pecan): 122299223
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Entry
122299223 CDS
T08745
Name
(RefSeq) uncharacterized protein LOC122299223
KO
K06100
symplekin
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122299223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122299223
03019 Messenger RNA biogenesis [BR:
cill03019
]
122299223
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122299223
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122299223
U7-dependent histone pre-mRNA processing factors
122299223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
122299223
NCBI-ProteinID:
XP_042965245
LinkDB
All DBs
Position
16:27462692..27493295
Genome browser
AA seq
1316 aa
AA seq
DB search
MAGAPRDQALSLLAAANNHGDLAVKMSSLKQAKDILISVDPSLATELFPYLAELQSSPES
LVRKLLIEVIEEIGLKAMELSPVLMPVLLALLSDDESIVARQCIISGTNIFSRVLEELAL
QYHRRGKIERWLEELWMWMAKFKDAVISIALEPGSVGRKLLALKLLETYVLYFTSDTNDF
EKPVTEASRRAFNISWLVGGHPILDPVVLMSEANRTLGILLNLLLSASSLPGSVTITIIN
CLAAIARKRPLHYSSVLSALLDFDLNLESVKGCHAASIQYSLRTAFLGFLRCTHPTIIES
RDRLLGALRAMNAGDAADQVIRQVDKIMKNTERASRDVRLGKDDQLSSQLPIAGDLSTKR
SFPLDNEEPANGHEVASKRFRYGPDIQSALPVQVVDSAHDSVTVNGLSPVLHRQLSPVEQ
MIAMIGALLAEGERGAESLEILISKVHPDLLADIVITNMKHLPKTPPPLTRLGNLPVTQQ
LGSLNTAPTNSEEPPDVSARAPLSSATATSSLSDTPLVNNHSADSKRDLRRDPRRLDPRR
VVVPVGVPSNPIAEDTGAAQSEFDLSISLSKPISLSVTTSLESPSTSLTSMIKSDDKILE
SPLVSGASQLTPAFDKTEEIDLIPEVDPSSDPTPSPVNKVDEDSIEMKLSDVVVANGVDT
SSFLESDQHSPTVSNASASEDSCQDLPLLPSYVELTEEQERRVRKLAVEQIIESYEQPCG
TECSQMRMALLARLVAQIGTDDDVVTMLKEHVVVEYQRQKGHELILHVLYHLHTLMILDS
AETSSVAAVVYEKLLLAVAKSLLDSFPASDKSFSRLFGEVPLLPDSALKLLDDLCYADVT
DHLGRDVRDVERVTQGLGAVWILILGRPVNRHSCLDIVLKCAVHSQDEIRARAIRLVANK
LYQLSYISESIEQFAKNMLLAAVDHHISDIELSESGTEQRVKGEVESQETSTSGSQVSEP
GPSDNNFSRGMQSLLRNTSTVSLPEAQRLISLFFALCTKKPSLLQLVFNNYYQAPKAVKQ
AFHRHIPILIRSLGSSCSELLHIISDPPQGSENLLTLVLEILTQETTPSSDLIATVKHLY
ETKLKDVTILIPMLSSLSKNEVLPIFPRLVDLPLEKFQMALAHILQGSAHMGPALTPAEV
LVAIHHIAPEKDGLPLKKITDACSACFEQRTVFTHQVLAKALSQMVDQTPLPLLFMRTVI
QAIDAFPTLVDFVMEILSKLVTRQVWRMPKLWVGFLKCVSQTQPHSFDVLLQLPPPQLES
TLNKHSNLRGALAAYATQPSIRTSIPRSTLSVLGLANDTHMQRVSSLHSTETSSSV
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atggccggagctcccagagaccaggcgctctcccttctcgccgccgccaacaaccacggg
gatctggcggtgaagatgtcttctctgaagcaggccaaggacattctcatttccgtggat
ccttctttggccaccgagcttttcccctacttggccgagctccagtcctcccccgaaagc
ctcgtccgcaaattgctcatagaggtgattgaagaaattggtttgaaagcaatggagctt
tcacctgtgcttatgccggtgttattggcgcttttaagtgatgacgagtctattgttgcg
aggcaatgtattattagtggcacaaatatcttttctagggttctcgaagaattggcactg
cagtatcaccgtcggggtaaaattgagaggtggcttgaagagctttggatgtggatggct
aagttcaaggatgctgtcatttccattgcattggagcctggctcagttgggagaaagttg
ctggctttgaaattgttggaaacatatgttttatactttacatctgataccaatgatttt
gaaaagcctgtcacagaagcaagtaggcgggctttcaacatatcatggttggttggtggt
caccctattttggacccggttgtgcttatgtcagaagcaaacagaacacttggcattctc
ttaaatttgttgctgtcagccagtagccttcctggttcagtgacgataaccattattaac
tgtcttgcagccatagctaggaagaggccactccactatagttctgttctttctgctctt
cttgattttgatcttaaccttgagtcggtcaaaggatgtcatgctgccagtatccagtat
tccttaagaactgcttttttgggattcctaaggtgtactcatccaaccattatagagtca
agagatagattgcttggggctctccgagctatgaatgctggggatgctgctgatcaggtt
atccggcaagttgataaaataatgaaaaatactgagcgtgcttcacgagatgttcggctc
ggcaaggatgatcaattatcaagccagttgcccatagcaggtgatctgtcaacgaaaagg
tcatttcctctggataatgaagagccagctaatggtcatgaggtggcttccaagcggttc
cggtatggtcctgacatccagtcggctttgccagttcaagtagttgattctgcgcatgat
tcggttactgttaatggactatctcccgtattgcatcgccaactgagccctgtggaacag
atgattgccatgattggtgctttgcttgcggaaggcgaaagaggtgctgaatcacttgaa
atccttatttcaaaagttcatcctgatctgctggctgatattgtcataacaaatatgaag
cacttgcctaagacacctccacctttaacaaggcttgggaacttgccagtaactcaacaa
ttgggctctctaaatactgctcctacaaattctgaagaacctccagatgtcagtgcacga
gcacctctttcttcagctactgcaactagttcattgtctgatacgcctctggtcaataat
cactctgctgattcaaaacgtgatctgcgaagggatcctcgtcggctggatccaagacgt
gtagtagtccctgttggggtcccttccaatccaattgcagaggacactggagctgcgcaa
tctgagtttgaccttagtatttctttgagtaaacccatttcactttctgttactaccagt
ctcgaaagcccttctacatctctcacgtccatgatcaaaagtgacgataaaattttggaa
agtccattggtttctggtgctagtcaactaactcctgcttttgataaaaccgaggaaatt
gacctaatcccagaggttgatccctcttcagatccaacaccttctccagttaacaaagtt
gatgaggactcgattgaaatgaagttgtcggatgttgtagtggcaaatggggttgataca
tcgtcttttctagaatccgatcagcattctcctactgtttcaaacgcatctgcatctgaa
gacagctgtcaggatttacctctgctcccatcatatgtggaactgactgaagaacaggaa
agacgtgtgagaaaattggcagttgaacaaataattgaatcatatgagcagccatgtggg
actgagtgcagccagatgcgtatggcattacttgctcgattggttgctcagattggcact
gatgatgacgttgttacgatgctgaaagaacatgttgtcgttgagtaccaacggcaaaag
gggcatgagcttattttgcacgtgttgtaccatctgcatactctcatgatcttggattct
gcggaaacctcttcagttgctgctgttgtgtatgaaaagctgcttttggctgtggccaaa
tctttgctggactcttttccagcttcagacaagtcctttagtagactttttggtgaagtc
ccacttttgcctgactctgccttgaaactactagatgatctctgctatgctgatgtcact
gatcaccttgggagagatgtacgtgatgttgagcgtgttactcagggccttggagctgtg
tggattttgattttggggcgaccggttaatcggcattcctgcttggatatagttttgaag
tgtgctgttcattctcaagatgagatccgagccagagcaatccggctggtggcgaacaag
ctttatcagctaagctacatatcagaaagtattgagcaatttgcaaaaaatatgttgttg
gctgctgtagatcatcatatttcagatatagaactttcagagtctggaactgagcaaaga
gtcaaaggggaggttgaaagccaagaaacatctaccagtggttctcaggtttcagagccg
gggccctctgacaataacttctcaaggggcatgcaatcattactgcgcaacacttcaact
gtgtcattgcccgaagctcaaagactcatttctttgttttttgctttatgtacaaagaaa
ccaagtcttctgcaacttgtatttaataattactaccaagccccaaaagctgtcaagcag
gcttttcatcgtcatatcccgattcttataaggtccctagggtcatcttgttctgaattg
ctccatatcatatctgatccaccacaaggaagtgaaaatcttttgacactggtgttggaa
atattgactcaagagacaacgccttcttctgatctgatagcgactgttaaacatttatat
gaaactaaactaaaggatgtcacaattcttattccaatgctgtcttcactttccaaaaat
gaggttttacctatttttcctcggcttgttgaccttccgctagaaaagttccagatggca
cttgctcacatactgcagggttcagctcatatgggtccagctttgacacctgcggaagta
ttagtcgctatccatcacatagctcctgagaaagatggccttccacttaaaaagataaca
gatgcttgctcagcctgttttgagcaacgcacagttttcacgcatcaggtcttggccaag
gcattgagccagatggtcgatcaaactcctctacctctactcttcatgagaacagtgatt
caggcaattgatgcttttcctacactggttgattttgttatggagattctttccaaactt
gtgactagacaggtgtggagaatgcctaagctttgggttggctttttgaaatgtgtctcg
caaacgcagccacattcgtttgatgtgctgctacagttaccgccaccacaacttgaaagt
actctgaacaaacactctaaccttaggggtgcccttgctgcttatgcaacccagccgagt
attagaacttcaatacctagatcgacactatcggttctgggtctcgcaaatgacacacac
atgcaacgtgtgtcatcattgcattctactgaaacgagttcttcagtttag
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