Carya illinoinensis (pecan): 122299345
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Entry
122299345 CDS
T08745
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122299345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122299345
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122299345
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
PRP6_TPR
TPR_15
TPR_2
TPR_YpiA
TPR_16
TPR_CcmH_CycH
Iml2-TPR_39
CFAP70_mid_TPR
DUF1993
Methyltransf_37
TPR_12
TPR_Slam
Motif
Other DBs
NCBI-GeneID:
122299345
NCBI-ProteinID:
XP_042965492
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Position
16:complement(923259..938718)
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AA seq
818 aa
AA seq
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MYFVRSILGILLLTVSLNLTGAPNAASIVRHRSNLCLPPWCPFFFLQDKTMGDSKALDDK
YNIEAAEVLANEAQHLPITEAAPIYEQLLTLFPTAAKYWKQYVEAHMAVNNDDATKQIFS
RCLLNCLQIPLWRCYIRFIKMANESKGLEGQEETRKAFDFMLNYVGADIASGPIWMEYIT
FLKSLPALSTQEESQRMTAVRKVYQKAIVTPTHHIEQLWRDYENFENSVSRQLAKGLLSE
YQPKFNSARAVYRERKKYVDEIDWNMLAVPPSGSYKEEVQWMAWKRLLAFEKGNPQRIDS
ASSNKRIIFTYEQCLMYLYHYPDIWYDYATWHAKSGSVDTAVKLFQRALKALPDSEMLRY
AYAELEESRGAIQSAKKIYESLLGDDVNTTTLAHIQFIRFLRRTEGVEAARKYFLDARKS
PNCTYHVYVAYAMMAFCLDKDREIAHNVFEAGLKRFMHEPLYILEYADFLTRLNDDRNIR
ALFERALSSLPPEESVEVWKRFAQFEQTYGDLASMLKVEQRRKEALSRTGEEGASALEGS
LQDVVSRYSFMDLWPCSSKDLDHLARQEWLAKNMDKKVEKLALPNGPGSVDKDYAGLISN
STVSAKVVNPDVSKMVIYDPRQKSGIETLPSTTSSGVPAAYSNLSNPAAAIVGGGMTNAF
DEILKATPPALVAFLASLPVVEGPTPDVDVVLSICLQSDIPAGQTGKLGTSAVQLSGGPV
PTTSVLSGSSKSHPMPGGAPFKTTRDRQAGKRKDLDRQEDDETATVQSQPLPRDVFRIRQ
IQKSRGGTTTKARGVTTSQTGSASYGSALSGDLSGSTG
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgtactttgtccgtagtatactaggaatcctcctcctaacagtgtctctgaatcttact
ggcgctcctaacgctgcctccattgttcgacaccgctcaaatctatgtcttccaccgtgg
tgcccttttttcttccttcaagataaaacaatgggcgacagtaaagccttggatgataaa
tacaatatcgaagctgcagaagttcttgccaatgaggcgcagcatttgcccattacagag
gctgcaccgatatacgagcaacttcttacactttttccaacagccgcaaaatattggaag
cagtatgttgaggcacacatggctgtaaataatgatgatgctaccaaacagatatttagt
cgttgcttactaaactgtcttcaaatacctctttggcggtgctacattcgtttcattaaa
atggccaatgagtccaaggggttagagggtcaagaagagactagaaaagcttttgatttt
atgctcaactatgttggagcagacatagcatctgggcctatttggatggagtacatcacc
ttcttaaagtcgttgccagctctaagcactcaggaagagtcacaaagaatgactgctgtc
aggaaagtgtaccagaaagctattgttactcctactcatcacattgaacaactttggagg
gactacgagaactttgaaaactctgttagccgccaactggcaaaaggactgttatcagaa
tatcagcccaagtttaacagtgcaagggctgtctacagggagcggaagaaatatgttgat
gaaattgattggaatatgctggctgtaccaccgtctggctcttacaaggaagaagtgcaa
tggatggcatggaaacggttgttagcttttgagaagggaaacccgcagaggatcgacagt
gcatcctccaacaagcgaattatattcacatatgaacagtgtctgatgtatctgtaccat
tatcctgatatctggtatgactatgcgacatggcatgcaaaaagtggttcggtagatact
gcagtcaaattatttcagcgagctttgaaggctcttcctgactcagaaatgctaaggtat
gcatatgcagagctggaggaatctcgtggagcaattcagtctgcaaagaaaatatatgag
agccttttaggggatgatgttaacacaacgacgcttgcacatattcaatttattcgcttt
ctaagaaggactgagggtgttgaagcagctcgcaagtactttttagatgctcggaaatct
ccaaattgcacataccatgtttatgttgcttatgcaatgatggccttttgtcttgacaag
gatcgagagattgcacataatgttttcgaagcgggattgaaacggtttatgcatgagcct
ctatacattcttgaatatgcagattttttgacacgcttgaatgatgatagaaatatccgg
gccttattcgagcgggcactgagttcactcccaccagaggaatctgttgaggtttggaaa
cgatttgcccaatttgagcaaacttatggagatctggcaagcatgttgaaggttgaacaa
agaaggaaggaagctctttcgagaacaggggaagaaggagcatcagcattagagggatcg
ttgcaagatgttgtctcacgttacagtttcatggatctttggccatgctcttctaaagat
ttggatcatttggcacggcaagagtggcttgccaaaaatatggataagaaggttgagaag
ttggctctgcctaatggacctgggtctgtagataaggattatgcgggcctgataagcaat
tcaactgtgtctgcaaaggttgttaatcctgatgtttctaagatggtgatttatgaccca
agacaaaaatctgggatagagactcttccaagcacaacatcatctggagttcctgctgca
tatagcaacttatcaaatccagctgctgcaatagtgggtggtgggatgaccaatgcattt
gatgaaatactgaaagcaacacctcctgcattggttgcatttctagcaagcttgcctgtt
gttgagggcccaacaccggatgtggatgttgtattatctatttgcttgcagagtgatata
ccagcagggcagactggcaagttaggtacttccgcagtgcaattgtcaggtggtcctgtc
cctactacaagtgtcctctctggttccagcaagtcccatcccatgccaggtggcgcacct
tttaaaactactagggacagacaagcagggaaaagaaaagacctagacagacaagaggac
gatgaaactgccactgtccaaagccagccactacctagagatgttttcaggatacggcag
atccagaaatctcgaggaggtacgactacaaaagcacgaggagttactacttcacaaaca
ggatcagcttcatatggaagtgcactttctggagacttgtctggtagcactggctga
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