Carya illinoinensis (pecan): 122299415
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Entry
122299415 CDS
T08745
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 5
KO
K05391
cyclic nucleotide gated channel, plant
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
122299415
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cill04040
]
122299415
Ion channels [BR:
cill04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
122299415
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GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Ion_trans_2
IQ
Motif
Other DBs
NCBI-GeneID:
122299415
NCBI-ProteinID:
XP_042965613
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All DBs
Position
16:29064577..29080247
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AA seq
728 aa
AA seq
DB search
MDRDYKSQYMGGQREKFVRLDDLDSTLSSSSDTGVNRCGFDVEGFRRTAHARDGTSRSFK
RGMRKGSEGLKSIGRSLRFGVSRGVFPEDLKVSEKNIFDPQDKFLLFWNRLSVISCILAV
SVDPLFYYLPVVNQSSDCIGIDRKLAITVTTLRTIVDTFHLIHMALQFRTAYIAPSSRVF
GRGELVIDPAQIARRYLRRYFIVDFLSVLPLPQIVVWRFLQMSDGSDVMATKRALFFIVL
LQYFPRFLRILPLTSELKRTAGVFVETAWAGAAYYLLLYMLASHIVGAFWYLLAIERIDA
CWQDACPDNKICKRSLYCSKQTVGPSSWHSQLNSSCSVGDNSQFDYGIFENALSSEIVSS
MKFVSKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAILGLILFALLIGNMQTYLQ
SLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEESLVQSLPKDL
RRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIR
GRLESVTTDGGRSGFFNRSFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAF
ALIAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFVQAAWRRYSKRKNMELQRKE
EEEKAEKLAGTGNIVGGGSYSLGATFLASRFAANAMRGVHRNRNAKTARELIKLQKPPEP
DFAVDDTD
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggatcgtgattacaaatcacaatacatgggtggccaacgcgagaagtttgtcaggttg
gatgacttggactctacattatcatcatcttccgatactggtgtgaatagatgtggattt
gatgttgagggatttcgccgtactgcacacgcaagagatggaacgtctagatcatttaag
agaggaatgagaaagggatctgaaggacttaagtcgattggtcgatcacttagatttggg
gtttctcggggagtgttcccagaagatcttaaagtttcagagaagaatatatttgatcca
caagacaaattcctccttttttggaatagactctctgtaatatcatgtattttggctgtc
tcagtggatccccttttttattatcttcctgttgttaatcaatcatcagattgcattggt
atagaccgaaagttggcgatcacagtgactacattgcggacaattgttgacactttccat
cttattcacatggctctccaattccgaacagcttacattgccccatcctctcgggtgttt
ggacggggtgaacttgtgattgatcctgcacaaatagcccggcgatacctgcggcggtac
tttatcgttgattttctttccgtgctacccctacctcagattgtggtttggagatttctt
cagatgtcagatggttcagatgtaatggctacaaaacgggccctgtttttcattgtcttg
cttcaatattttcccagatttcttcgaatattacctttaacttcagaactcaaaaggaca
gcaggtgtctttgttgaaactgcttgggcaggtgctgcatattacttgctattgtacatg
cttgctagtcatatagttggggcattctggtacctgttagctatagaacgcattgatgca
tgctggcaggacgcttgtcctgataataaaatttgtaaaagatccttgtattgcagcaag
caaaccgtgggaccaagttcatggcattctcagcttaattcaagttgctcagttggtgat
aactcgcaatttgattatggaatctttgaaaatgctttgtcatctgaaattgtctcatcc
atgaagtttgtctctaaatactgttactgtttatggtgggggctacagaatttaagtaca
cttggccagggacttcaaaccagcacctatcctggggaggttatattttccatagcacta
gccatacttggactcatcctctttgcgcttctgattggcaacatgcagacctatcttcag
tcgcttactattaggctagaggagatgagggttaaaaggcgtgactcagaacagtggatg
catcatcgcttgctcccacaggaacttagggagcgggttagacgttatgatcagtacaag
tggttggaaacacgcggtgtggatgaagagagtttggttcagagtctaccaaaagatctt
agaagagatatcaagcgacatctctgtcttgctttagtgaggagggttcctctatttgag
aacatggatgagaggttgcttgatgccatttgtgagcgacttaaaccatgtttattcaca
gagagtacttacattgtccgggaaggcgatccagttgatgagatgctctttatcatacgt
ggtcgccttgagagtgtaaccactgatggtggtagaagtgggtttttcaaccgtagtttt
ctgaaagaaggtgatttctgtggggaggagcttctgacctgggcactggatcccaaatca
ggatctaacctcccatcttctacacggacagtgaaagctataacagaggttgaggctttc
gccctaattgctgaagagttaaaatttgtggcaagtcaatttaggcgccttcacagtaga
caggtacagcacaccttccgtttctattcacagcagtggaggacttgggccgcatgcttt
gtccaagcggcatggcgtcgatattccaagaggaagaatatggaacttcagcgtaaggaa
gaagaagaaaaggcagaaaagttggcagggactggcaacattgttggtggtggttcatat
agtcttggtgccactttcttagcttccaggtttgcagcaaacgcaatgcgtggtgttcat
cgaaatcggaatgcaaagactgctagggaattgataaaactgcagaagcctccggagcct
gattttgctgttgatgatacagattga
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