Carya illinoinensis (pecan): 122299451
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Entry
122299451 CDS
T08745
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122299451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cill03009
]
122299451
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
122299451
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Utp21
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
Beta-prop_THOC3
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_Gbeta
Beta-prop_EML
ASA1
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
EIF3I
ANAPC4_WD40
Beta-prop_VPS8
Beta-prop_HPS5
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_WDR41
Beta-prop_NOL10_N
Beta-prop_DCAF4
PAC11
CFAP251_N
DSE1_N
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_ACSF4
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_WDR75_2nd
Beta-prop_SCAP
PEP5_VPS11_N
WD40_like
WD40_RFWD3
Beta-prop_LRRK2
WD_LRWD1
WDCP
VID27
Motif
Other DBs
NCBI-GeneID:
122299451
NCBI-ProteinID:
XP_042965685
LinkDB
All DBs
Position
16
Genome browser
AA seq
906 aa
AA seq
DB search
MGIFEPYRALGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCEKLNLVVVGPQLPKKIR
ALASYREYTFVAYGNEIAVFKRAHQVANWNRHSAKVNLLLLFGEHILSVDVEGNMFMWTF
KGINQTSAPFGHISLGEKFTPSCIVHPDTYLNKVILGSQEGSLQLWNISTKKKLYEFKGW
NSAISSCVSSPALDVIAVGCADGKIHVHNIRYDEELVTFTHSTRGAVTALSFSTDGQPLL
ASGGSSGVISIWNLEKRRLQSVIREAHDSSIISLHFFANEPALLSSSADNSIKKWKFGTS
DGDPILHSFRCGHSAPPLCIRFYADGRFILSAGRDRAFRLFSVIQDKQSKELSQHHVSKR
AKKLRVKEEEIKLKPVISFDCAEIRERDWCNVVTCHMDTAQAYVWRLKHFVLGEHILNPC
PEDPTPVKACAISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERRSCAHDGEVVGV
ACDATNTLMISAGYHGDIKVWDFKGRELKFRWEIGSSVVKIVYHRINGLLATVGDDFIIR
LFDAVALRMVRKFEGHMDRITDLCFSEDGKWLVSSSMDGSLRIWDVILARQIDAMHVDVP
ITALSLSPNMDVLATTHVDQNGVYLWVNQVMFSGALNANSYGTGKEVVSVKLPPVSSMES
SQAEDSDEPVDLQSKDASAFRSRDQQIPDLVTLSLLPKSQWQSLINLDIIKLRNKPIEPP
KKPEMAPFFLPSVPSLSGEILFKPSKMATEERDAKVDEVENNRRQSGMPPSQFLQLLQSS
MEIKNFSAFTEYIKGLSPSTLDVELRMLQIIDDDDQQEPDKRPELLTIDLLLDYFIHEIS
CRNDFEFIQAVIRLFLKIHGETVRRQSRLQEKARKLLEIQSTVWQRVDKLFQSARCMVTF
LSNSQF
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgggaatattcgaaccttacagagctctagggtacataacgaccagcgtccccttctcc
gtccagcgactgggcactgaaaccttcgttactgtcagcgtcggcaaagctttccaagtt
tacaattgcgagaagcttaatctggttgttgtcggtcctcaattgccaaagaagattcgc
gctcttgcttcctatcgtgagtacacatttgttgcctacgggaatgagattgcggttttt
aagcgtgctcaccaggtagcaaattggaacaggcacagtgctaaagtcaatttgttgctg
ttgtttggagaacatatccttagtgttgatgttgaaggtaacatgttcatgtggacattt
aaaggaatcaaccagacttctgctccctttggacacatctcgctaggtgaaaaatttact
cctagctgtatagtgcatccagatacttatttgaataaggttattcttgggagccaggaa
ggttctctgcagctttggaacattagtacaaagaaaaaactctatgagttcaagggctgg
aactcagctatatccagttgtgtttcatcaccagcacttgatgttattgcagttggctgt
gctgatggaaagattcatgttcacaacattcgttatgatgaggaattggttacctttaca
cattctacacgaggtgctgtgactgccttatcttttagcacagatggacaacctcttcta
gcctccggaggttcatctggtgttatcagcatatggaatcttgaaaaaagaaggctccaa
tcagtaataagagaggcccatgatagttcgataatttcactgcatttttttgcaaatgag
cctgccttattgagttcctctgcagacaactctattaagaagtggaaatttggcacgagt
gatggagatcctattcttcatagctttagatgtggacacagcgctcctccactttgcata
aggttttatgcagatgggaggttcattctatctgctggacgggatcgtgccttccgcctt
ttctctgtaattcaggacaagcaaagtaaagagctttcacagcaccatgtatctaaacga
gccaagaaactgagggtgaaggaagaagagataaagttgaagcctgttatttcatttgat
tgtgctgaaattagagagcgggattggtgcaatgtggttacatgtcatatggatactgca
caggcatatgtgtggagacttaaacactttgttcttggtgagcatattctgaatccatgc
ccagaagatccaacacctgttaaggcctgtgccatttctgcatgtggcaattttgccgtg
ttagggacagcaggtggttggattgaacgattcaaccttcagtcaggaatcagccgaggc
agctatctggacatgtcagaaagaagaagctgtgcccatgatggggaagtagttggagtt
gcttgtgatgcaacgaatactctcatgataagcgcaggatatcatggagacataaaggta
tgggatttcaagggacgtgaactaaaattcagatgggaaattggttcttctgttgttaag
attgtttaccatcgcattaatggtcttttggctactgtaggtgatgatttcattatccgt
ttgtttgatgctgtggcattaagaatggtacgtaaatttgaaggccatatggatcgcatt
acagatttgtgttttagtgaggatggaaaatggctcgtgtcatcaagtatggatggaagt
cttcgaatctgggatgttatcttagcacgacagatagatgcgatgcatgttgatgttccc
atcacagcgttgtctctgtctccaaatatggatgttttagcaactacccatgtggatcaa
aatggggtctacttatgggtaaatcaggtgatgttttctggagctttaaatgccaattcc
tacggaaccggaaaagaagttgtgagcgttaagctgccccccgtctcttccatggaaagt
tcccaagctgaagattctgatgaacctgttgacttgcagtctaaggatgcttctgctttc
cggtctcgagatcagcaaatacctgatctagttacactctcactattgcctaaaagccag
tggcaaagcttgatcaatctagacatcataaagctccgcaataagccaatcgagcctcca
aagaaacctgaaatggctcccttctttctgccttctgttccatctctctctggtgaaata
ctgtttaagcctagtaagatggcaactgaagagagagatgcaaaagttgatgaggtggaa
aacaacaggaggcaatctggcatgccaccatcccaatttctgcaactccttcagtcttct
atggagattaaaaatttttcggcatttactgagtatattaaaggtttgtctccatcaact
ttggatgtggaacttcgaatgcttcaaattatagatgatgatgatcagcaagaaccagat
aagaggccagagttacttacgattgacttacttttggattactttatacacgagatctcc
tgcaggaacgattttgagtttattcaagcagtcatcaggttgtttctgaagatacatgga
gagacggttaggcgccagtcaagactacaggagaaggcgaggaagcttctagaaatacag
tccacggtatggcaaagagtagacaaactgttccaaagtgccagatgcatggtgaccttt
cttagcaattcacaattttaa
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