Carya illinoinensis (pecan): 122299452
Help
Entry
122299452 CDS
T08745
Name
(RefSeq) replication factor C subunit 2-like isoform X1
KO
K10755
replication factor C subunit 2/4
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03030
DNA replication
cill03410
Base excision repair
cill03420
Nucleotide excision repair
cill03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122299452
03410 Base excision repair
122299452
03420 Nucleotide excision repair
122299452
03430 Mismatch repair
122299452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cill03032
]
122299452
03036 Chromosome and associated proteins [BR:
cill03036
]
122299452
03400 DNA repair and recombination proteins [BR:
cill03400
]
122299452
DNA replication proteins [BR:
cill03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122299452
DNA Replication Termination Factors
ELG1-RFC complex
122299452
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
122299452
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122299452
Check point factors
HRAD17(Rad24)-RFC complex
122299452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_22
Rad17
RuvB_N
AAA_assoc_2
Mg_chelatase
AAA_11
AAA_16
DUF3802
ResIII
nSTAND3
AAA_5
AAA_14
SLFN-g3_helicase
AAA_24
AAA_2
PhoH
AAA_30
AAA_7
AAA_28
AAA_19
AAA_25
T2SSE
NPHP3_N
Parvo_NS1
CPG4
IstB_IS21
DUF815
RNA_helicase
DNAX_ATPase_lid
TIP49
AAA_18
bpMoxR
NB-ARC
Motif
Other DBs
NCBI-GeneID:
122299452
NCBI-ProteinID:
XP_042965686
LinkDB
All DBs
Position
16:3946076..3972722
Genome browser
AA seq
342 aa
AA seq
DB search
MAPVLQSSQQWVEKYRPKQVKDVAHQEEVVRVLTNTLQTSNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGGYPCPPFKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS
SRILHICKEERLNLDAEALSTLSSISQGDLRRAITYLQSAVRLFGSSISSKDLISVSGVI
PQEIVKAFLVTCKSGNFDVANKEVNDIIAEGYPVSQMLYQLLEVVVEADDVSDEQKARIC
KKLAEADKCLVDGADEYLQLLDVASNTMRALCNMPQEFSYEC
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggcgccagtattgcaaagctctcagcaatgggtcgaaaaatatcggccaaaacaagtg
aaagatgtagcacaccaggaggaggtggttcgggtcctcacaaacaccctccagaccagc
aattgcccgcatatgctcttctacggcccacccggcacaggcaagaccaccaccgcgcta
gccatcgctcaccagctctttgggcctgagctctacaagtctagggtgctggagctgaat
gcgagtgatgaccgtggcatcaacgttgttagaacaaagatcaaagattttgctgccgtg
gctgttggttctggtcagcgtcaaggaggttatccatgtccaccattcaagatcatcatt
ctagatgaggcagattcaatgactgaagatgctcagaatgccctgaggcgtactatggaa
acctactccaaagttacaagattttttttcatctgtaattacatcagcaggatcatagaa
ccacttgcttcaaggtgtgcaaagttcaggttcaaaccactttcagaagaaatcatgagc
agtcgaatattgcatatttgcaaagaagaacgcctcaatctggatgccgaggctctttca
accttgagttctatttcacaaggtgatcttcgtcgggctattacgtacttacagtcagct
gtgcgattatttggatcatccatttcttcgaaggatctgattagcgtgtctggggtcatt
ccacaagagattgtcaaggcatttcttgtaacttgtaaaagtggtaactttgatgtggca
aacaaggaagtcaatgatataattgcagagggatatccagtctctcagatgctttaccag
ttacttgaggtggttgttgaggcagatgatgtatcagatgaacagaaggccagaatttgc
aagaaattggctgaagcagataagtgtctagttgatggtgcagacgagtacctgcagttg
ctggatgtagctagcaatacaatgcgagctctttgtaacatgccacaagaattttcttat
gagtgttag
DBGET
integrated database retrieval system
