Carya illinoinensis (pecan): 122300088
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Entry
122300088 CDS
T08745
Name
(RefSeq) protein LATE ELONGATED HYPOCOTYL-like isoform X1
KO
K12133
MYB-related transcription factor LHY
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
122300088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cill03000
]
122300088
Transcription factors [BR:
cill03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
122300088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
Med13_C
Motif
Other DBs
NCBI-GeneID:
122300088
NCBI-ProteinID:
XP_042966413
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Position
2:10200232..10212129
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AA seq
782 aa
AA seq
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MDTYSSGEELIIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRLEEHIGTKTAVQ
IRSHAQKFFSKLEKEALIKGVPAGQALDIEIPPPRPKRKPTNPYPRKKSISVPASQVGAN
DGKLLTSVSSLHFKQALDLEKEPPPENGSEKLKNAKDNQDDNCSVLFLHKEAQQSSVSSA
NKGSVSSPVALRNSCMSRDFIPSIKGAITQDETNESFVTVEHEENQKSDKADAKLVQGTS
TSKGSTLENLNVPHKKSVQGEKTDDLSCALPIEEMQTTQNYPRHVSVHILDGSLGTCTQT
PSSDMSFQESIFHPMGEVRGHPNLFHPASTASSEHQMNIPRSSVQQSFPPPPFTPICHKQ
DDYQSLQLSSTFSSLIVSTLLQNPAAHAAATFAATIWPYANVETSADSPVGNPGGFPLRQ
MGSTPSMAAIAAATVAAATAWWAAHGLLPICAPLHTAYACVPPSTAAVSPMDDRAPAAKT
DKEENTLQNPSMQQLAPEYSETAKAHNSASKSPTLSSSESVESGGAKLSTGSKVDDHEKV
EAATELHDLNKAKTELHDLNKAKNRKQVDRSSCGSNTTSGSEVETDALEKHEKAKLEKHE
KGMEEPTEPDANPLAAEISNRRSRTVTNVVDLWKEVSEEGRLAFQALFSREVLPQSFSPP
PDENNKENQKDNIKEDKQNNADEENGNASLLDLNSRTCGSCSNHQVNSKEGSNNGEDGLL
KIGLGHGNLIGLGHGNLKTRRTGFKPYKRCSVDAKDNRVTNTSIQGEEKGPKRIRLEGAA
ST
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggacacatactcctctggtgaagaacttattattaagacgcgaaaaccgtatacaatt
acaaagcaacgagagcgatggacagaggaggagcataacaggtttctagaagccttgaaa
ctttatgggcgagcttggcagcggctagaagaacatataggaacaaagactgctgtgcag
atcaggagtcatgcacagaaattcttctctaagttagagaaggaggctctcattaaaggt
gttcccgcaggacaagctcttgatatagaaattccacctccacgccctaagaggaaacca
accaatccttatccacggaaaaaaagcatcagtgttcctgcatcacaggtgggagcaaac
gatggaaaacttttgacatcagtttcgtctttgcattttaaacaagcactggacttggag
aaagaaccaccacctgagaatggaagtgaaaaactgaaaaatgcgaaagataatcaggat
gacaattgctcagtgctcttccttcacaaagaagcccaacaatcttctgtttcttcagca
aacaaaggttctgtatctagtcctgtcgcactcagaaactcatgtatgtcaagggacttt
atcccttcaattaaaggtgcaattacacaggatgaaacaaatgaatcctttgtcaccgtc
gaacatgaagaaaatcagaagtcagacaaagctgatgccaaactggttcagggtactagc
actagtaaaggctcaacgttggagaatttgaatgtcccacacaagaaatctgttcaaggt
gaaaaaacagatgacttgagttgtgcattgccaatagaggagatgcaaaccactcagaac
tatccaaggcacgtctctgtgcacattctagatggaagcctaggaacgtgtactcaaact
ccttcctcagatatgtcattccaggagtccatatttcacccaatgggagaggttcgtggt
caccctaacctgttccaccccgcttcaactgccagttctgaacaccaaatgaacattccc
agatcttctgttcaacaatcatttccacctcctccctttacgccaatttgccataaacag
gatgactaccaatcacttcaactttcctctacattttcaagtcttattgtctctactttg
ctgcaaaatcctgcagctcatgccgcagcaacttttgcagctaccatttggccctatgca
aatgtggagacttctgcagattctccagtaggcaacccaggaggtttcccattgaggcaa
atgggatctactccaagtatggcagctattgcggctgctactgtagctgctgcaactgca
tggtgggcagcccacggactacttcctatatgtgctcctcttcatactgcttatgcttgc
gttcccccatccactgctgctgtttcacctatggatgatcgagccccagcagccaagaca
gacaaagaagagaatactcttcaaaatccttccatgcaacaactggcgccggaatattca
gaaactgcgaaggctcataattcagcttcaaaatcacctactctgtcctcatcagagtct
gtggagagtggaggtgcaaagctaagcacgggatcaaaagttgatgatcatgagaaggtt
gaagcagctactgagctccatgatttaaacaaagcaaaaaccgagctccatgatttaaac
aaagcaaaaaatagaaagcaggtagaccgatcctcttgtggttccaacacaacttctggc
agtgaggtagagactgatgcattggagaagcatgagaaagcaaagttagagaagcatgag
aaaggaatggaagagccaacagaacctgatgcaaaccctctagctgctgagatcagtaat
cgccgcagcagaactgtcaccaatgtggttgatttgtggaaggaggtctccgaagagggg
cggctggcctttcaagcactcttctctagagaggtgttgccacaaagcttttcgcctcca
cccgatgaaaataacaaggaaaatcagaaggacaatatcaaagaagacaagcaaaataat
gcagatgaggaaaatggaaatgcatctcttttagacctcaacagcagaacatgtgggtct
tgttcaaaccatcaagtaaactcgaaggaaggcagcaacaatggagaggacgggctgcta
aaaataggacttggacatggaaatctaataggacttggacatggaaatcttaaaactcgt
cgaacgggatttaagccatacaaaaggtgttcggtagatgccaaggataaccgggtgaca
aataccagcatccagggggaagagaaaggtccaaagcggattcgcttggaaggggcagct
tcaacttga
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