KEGG   Carya illinoinensis (pecan): 122300576
Entry
122300576         CDS       T08745                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122300576
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cill03041]
    122300576
Spliceosome [BR:cill03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    122300576
 Complex C
   U5 SnRNP specific factors
    122300576
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_SPT8 Beta-prop_SCAP ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N eIF2A Beta-prop_WDR75_2nd Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_RIG_1st Beta-prop_Nup120_160 Beta-prop_NWD2_C Nbas_N RMC1_N
Other DBs
NCBI-GeneID: 122300576
NCBI-ProteinID: XP_042967269
LinkDB
Position
2:complement(26538837..26544428)
AA seq 345 aa
MEVIPAWGENALSMAGPRPMEWSTVPYSGPQAPGPNGKQRTSSLESPIMLLMGHQSAIYT
MKFNPAGTVVASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTSDGSQMISASPDK
TLRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP
DKYQITAVSFSDATDKIFTGGIDNDIKVWDLRKGEVSMTLQGHQDMITGMQLSPDGSYLL
TNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYI
WDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEV
NT seq 1038 nt   +upstreamnt  +downstreamnt
atggaagttattccagcatggggtgagaatgctttgtctatggctggcccaagaccaatg
gaatggtctactgtcccgtatagtggtccgcaagcacctgggccaaatgggaaacagcgg
acttcaagtttggaatcgccaatcatgttgctgatgggtcaccagagcgccatctacact
atgaagttcaatccagcgggaacagtggttgcatctggatctcatgacagagagatcttt
ttgtggaacgtacatggggattgcaagaacttcatggttttaaaaggacacaagaacgca
gttttggatcttcactggactagtgatggatcccagatgatatctgccagtcctgacaaa
accctgagggcatgggatgttgaaacagggaaacagataaagaaaatggcagagcactca
tcatttgtgaattcatgttgcccttctcgaaggggaccgccacttgttgttagtggatcc
gatgatggaactgccaaactgtgggacatgcggcagaggggtgcaatccaaacatttcca
gataaatatcaaatcacagctgtcagtttctcagatgcaacggacaagatcttcacaggt
gggattgacaatgatataaaggtatgggacttgcgcaagggtgaagtgtcaatgactctt
caagggcatcaagatatgataacaggtatgcagctgagtcccgatgggtcctatcttctt
acaaatggtatggactgcaagctctgcatatgggatatgcgtccgtacgcaccacaaaat
cgatgtgtgaaggtattggaagggcaccaacacaacttcgaaaagaacttgttgaaatgt
agttggtctcctgatggaagcaaagtcacggcagggagttcagatcggatggtttacata
tgggatacaacttctcgacgcatcttgtataagctccccggccatactggatcagttaat
gagtgcgtcttccatcccagtgaacctattgttggatcttgcagtagcgataaacagatt
tatctgggggaggtttag

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