Carya illinoinensis (pecan): 122300957
Help
Entry
122300957 CDS
T08745
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03082
ATP-dependent chromatin remodeling
cill03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122300957
03083 Polycomb repressive complex
122300957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cill03036
]
122300957
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
122300957
Histone modification proteins
HAT complexes
HATB complex
122300957
HDAC complexes
Sin3A-HDAC complex
122300957
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
122300957
PRC2.2
122300957
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
122300957
Heterochromatin formation proteins
Other heterochromatin formation proteins
122300957
Chromatin remodeling factors
NuRD complex
122300957
NuRF complex
122300957
NuRF complex (fruit fly)
122300957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_SPT8
Beta-prop_HPS5
eIF2A
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
122300957
NCBI-ProteinID:
XP_042967913
LinkDB
All DBs
Position
2:31814583..31820660
Genome browser
AA seq
467 aa
AA seq
DB search
MKDRGKDTEPSVDERYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLY
LSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKFKTIIHPGEVNRIRE
LPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE
PFVLSGGKDKSVVLWSIHDHISTLAADTGTTKSPGSGGTNSKHASKVGGSTDKPIDNPSI
GPRGIYQGHDDTVEDVQFCPSSAQEFCSVGDDSCLILWDARVGSTPVVKVEKAHGADIHC
VDWNPHDVNFILTGSADATVHMFDRRNLSSGEAGSPVHKFEGHDAAVLCVQWSPDKSSVF
GSSAEDGILNIWDHEKVGKKDDSVGSKMPNFPPGLFFRHAGHRDKVVDFHWNASDPWTIV
SVSDDCESTGGGGTLQIWRMIDLIYRPEEEVLAELDKFKSHILTCSS
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacagaggtaaagacactgaaccgtcggtggatgagaggtacacgcagtggaag
tcccttgtgccggtgctctacgactggctcgccaaccacaaccttgtctggccttctctt
tcttgccgatggggtccgcaactagaacaagccacttacaagaatcgtcaacgtctttac
ctttctgaacagactgatggcagtgttccaaatactcttgtcatagcaaactgtgaggtt
gttaaacctagagttgcagctgcagagcacatatcacagttcaatgaggaagcacgttct
ccctttgtgaagaagttcaaaactattatacaccctggcgaggtgaacagaatcagggaa
ctcccgcagaatagtaagatcgtggccacacacaccgacagtcctgatgttttaatctgg
gatgttgaggctcaaccaaatcgtcatgctgttctgggagctacaaattctcgtccagat
ctgatattgactgggcatcaagataatgctgaatttgctctggctatgtgccctactgaa
ccctttgtgctttctggaggcaaggacaagtctgttgttttgtggagcatccatgatcat
atttctactttagcagcagacacaggaactacaaagtctccagggtcaggtggcaccaat
agtaaacatgcctctaaggtcggtgggagtactgataaacccattgacaacccttctatt
ggtccaagaggtatctaccaagggcacgatgatactgtagaagatgtgcagttctgccca
tcgagtgcacaggagttctgtagtgtaggtgatgattcttgtctcatactatgggatgcc
agagtgggatctactccagttgtcaaggttgagaaagctcatggtgctgatatacattgt
gttgattggaatcctcatgatgtaaatttcatcctgacagggtctgctgatgctactgtt
cacatgtttgatcgccgtaatctcagttctggagaagctggatcacctgttcataaattt
gaaggtcacgatgctgctgtcctctgtgtacagtggtctccagacaagtcatcagtcttt
ggaagttctgctgaggatggcattctgaacatctgggatcatgagaaggttggtaaaaag
gatgactctgtaggatcaaaaatgccaaattttcctccaggcttgttcttccgacatgct
gggcatagggacaaggttgttgacttccattggaatgcatctgatccatggactattgtc
agtgtgtctgatgattgtgaaagtactggaggtggtggcacactacagatatggcggatg
atagatttgatatacaggcctgaggaagaggttctggctgagctggataagttcaagtcg
cacatcttaacatgttcctcttga
DBGET
integrated database retrieval system
