Carya illinoinensis (pecan): 122300961
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Entry
122300961 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122300961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122300961
03009 Ribosome biogenesis [BR:
cill03009
]
122300961
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122300961
Spliceosome [BR:
cill03041
]
Complex A
U1 snRNP components
U1 related factors
122300961
Complex B
122300961
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
Pre-60S particles
Helicases
122300961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
122300961
NCBI-ProteinID:
XP_042967918
LinkDB
All DBs
Position
2:31866077..31871810
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AA seq
504 aa
AA seq
DB search
MSRYDSRSGDPTSYRDRRSDSGFGGSAGNSGSVRSSSSRNTYVGVEPTKKLDLDGLTPFE
KNFYVESPSVAAMSDREVDEYRKRREITVEGRDVPKPVKSFRDIGFPDYVMQEITKAGFV
EPTPIQAQGWPMALEGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAP
TRELAVQIQNEATKFGASSKIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH
HTNLRRVTYLVLDEADRMLDMGFEPQIRKLVSQIRPDRQTLYWSATWPKEVEQLARQFLY
NPYKVTIGSSDLKANHAIRQHVDIVSENQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTASNARFAKELISILEEAGQKVSPELAAMGSG
APPPTGHGSFRDRGRGYGGGRSWN
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctatgacagccgctccggggaccccacttcttaccgtgaccgcagaagcgat
tcggggttcggtgggtctgcaggcaacagtggctcagttcggtcctcatctagcaggaat
acttacgttggtgtggagccaacgaagaaattggatttggatgggttgactccttttgag
aagaacttctatgtcgagtcgccatcagtggcagcaatgtcggacagggaggttgatgag
tatcgaaaacgaagggaaattactgttgaaggccgtgatgttccaaagcctgtcaagagt
tttcgtgatattggatttccagattatgtcatgcaagagattacgaaagctggctttgtg
gaacccactcctattcaagctcaaggatggccaatggctttggagggccgtgatctcatt
ggtattgctgaaacagggtcagggaagacacttgcctacctattgcctgccattgtccat
gttaatgcccagccaattctagctcctggagatggcccaattgtgttagtattagctcca
acacgtgaacttgctgtccaaatacaaaacgaagcaactaaatttggtgcatcatcaaag
attaaaaacacatgcatatatggtggggttccgaagggacctcaagtgcgtgatctccag
aaaggtgttgaaattgttattgctacaccggggaggttgattgatatgttggaatcacat
catacaaacttgcgaagggttacgtatcttgtgttggatgaggcagaccggatgctagac
atgggttttgagcctcaaattcgaaaacttgtttctcagattcgcccagaccgtcagact
ttatactggagtgccacctggcctaaggaggttgagcaacttgctaggcagttcctttac
aacccgtacaaggtgacaatagggtcttcggatttgaaagctaaccatgccatacgccag
catgtggacattgtttctgagaatcagaaatataacaaattggtgaagttgctggaggat
atcatggatggaagccggatactgatcttcatggatactaaaaaaggatgtgatcagatc
actcggcagcttcgcatggatggttggccagccctctcaattcatggagataaaagtcag
gcagaaagggattgggtcctgtcggagtttaaagctggcaagagtcctataatgactgca
acagatgttgcagctcgtggtttagatgtgaaggacgtgaaatatgtgataaactacgac
tttccaggttcacttgaggactatgttcatcgaattggtcgaacgggaagggctggggca
aaaggaactgcatacactttcttcacagcttcaaatgccagatttgcaaaggaactcatt
agcatactcgaggaagctggtcagaaggtcagtcctgaattggcagcaatggggagtggt
gcacctcccccgacaggtcatgggagttttcgagatcgggggaggggttatggtggtggt
cgctcttggaactaa
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