Carya illinoinensis (pecan): 122301118
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Entry
122301118 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03013
Nucleocytoplasmic transport
cill03015
mRNA surveillance pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122301118
09122 Translation
03013 Nucleocytoplasmic transport
122301118
03015 mRNA surveillance pathway
122301118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122301118
03041 Spliceosome [BR:
cill03041
]
122301118
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122301118
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122301118
Spliceosome [BR:
cill03041
]
Complex C
Other components
EJC/TREX
122301118
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122301118
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
122301118
NCBI-ProteinID:
XP_042968156
LinkDB
All DBs
Position
2:complement(33371556..33376633)
Genome browser
AA seq
427 aa
AA seq
DB search
MGEVKDNDYEEELVDFEEDDPKAFDSASARPQADSAKKGYVGIHGSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALAL
CHTRELAYQICHEFERFSTYLPDIRVAVFYGGVNIKIHKDMLKNECPHVVVGTPGRILAL
ARDKNLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQEPMEIYVDDETKLTLHGLVQHYILLKEAEKNRKLNDLLDALDFNQVVIFVKSVHR
AAELNKLLEECNFPSICIHSGMAQEERLKRYKNFKEGQSRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAGDSDVLNQVQSRFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagtgaaggacaacgactacgaggaagagctcgtcgactttgaagaagatgac
cctaaggccttcgactccgcctcagccagaccccaagctgattccgccaagaagggctat
gttgggattcacggttcgggattcagagacttcctgttgaaaccagagcttcttcgagcc
attgtggattcaggatttgaacatccatcggaagtgcaacatgagtgcatcccccaagct
atcctaggaatggatgtcatctgtcaagcaaaatctgggatggggaaaactgctgtcttt
gttctttccactcttcagcagatcgaacctgttgctggtcaagttgcagctcttgctctt
tgccacacaagagaactagcttaccagatttgtcatgaatttgagaggttcagtacctat
ttgcccgacatcagggttgctgtcttctatggtggtgtgaatattaagattcacaaggat
atgttgaaaaatgaatgccctcatgttgttgttggaacacctggaagaatcttggctcta
gccagggataaaaatcttgggttaaagaatgtgaggcatttcattcttgatgagtgtgat
aagatgctagaatcacttgacatgaggagagatgtgcaggaaatcttcaagatgactcct
catgacaagcaagtaatgatgttttcagcaactctgagtaaggagattcgtcctgtgtgc
aaaaaatttatgcaagagccaatggagatttatgttgatgatgagaccaagttgactctt
catggtcttgtacagcactacattttattgaaagaagcagagaaaaaccgcaaattgaat
gatcttcttgatgcattggacttcaatcaagttgtcatttttgtcaaaagtgtccacaga
gcagctgagctgaacaagttgcttgaggagtgtaacttcccctctatctgcattcattca
ggaatggctcaggaggaaaggttgaaacgttataagaatttcaaggaggggcaatcaaga
attctcgttgcaacagacttagttgggagggggattgatattgagcgtgttaacattgtt
atcaactatgacatgccagattctgctgatacatacctacacagggtgggaagggctggt
aggtttgggaccaaggggcttgcaattacttttgtctcgtctgctggcgactcagatgtc
cttaatcaggttcaatcaaggtttgaggtggacataaaggagcttcccgagcaaattgat
acttcaacttatatgccatcgtga
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