Carya illinoinensis (pecan): 122301353
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Entry
122301353 CDS
T08745
Name
(RefSeq) protein RDM16-like isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122301353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122301353
Spliceosome [BR:
cill03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122301353
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
122301353
NCBI-ProteinID:
XP_042968568
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Position
2:complement(35428862..35439315)
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AA seq
886 aa
AA seq
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MERLSERERPSKRAREDLDHRDRDHKHRSSKDEKRRESDHHHRHRSRLGHSHNEREGSRD
RDSKLERSYDDEREREGSRERDRPKHRGVKRGLLDADDEDLREGSDEGEGSLERRHSHSH
KRKERGVSEERSDGGEKKARVSGRRRFEDRDELDGEERKERNDRRLEDRVEKEEGDENDS
DFEYRKRVDGSELKVRVKEEVSDEEHLCKPRSANTANANGLSGNGAALESLTMESRSVPE
SYFPPSHHIPTKVSSISTTNENKGVIITRSHEVPGKSSTDGTSSAAGKSGSLSLDALAKA
KKALQMQKDLSEKLKKIPFLNKGSSSIPDGSLRLELKEGLKAPSVISGTGQGPNVLTAPT
NVSEGMTSTSLTLPSASAAAFVKPPVTGPSASAGLTTLPNIEAVKRAQELAARMGFRQDP
EFAPLINLFPGQTAATEFVVPQKPTKAPVLRLDALGREIDEHGNVVNVTKPSNLSTLKVN
INKQKKEAFQILRPELDVDPETNPHFDERMGIDKTKLLRPKRMTFQFVEEGKWSKEAEHI
KLKSKFGEAQAKEQKAKQAQLAKAKAAPDINPNLIEVAERIIIKEKPKDTIPEIEWWDAT
LLQAGAYGDIVDGTMVEDKLKKEKITIYVQHPRPIEPPAEPAPTPPQPLKLTKKEQKKLR
TQRRLAREKDKQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQ
AHIDRNIARKLTPAERREKKERKLFDEPNTVETNVSVYRINDLSHVQTRFKIDVNAQENR
LTGCAVISDGITVVVVEGGNKSIKRYGKLMLRRINWATAVKEEDEDGDDKPAKRCVLVWQ
GSVAKSSFNRFTVHECMTEAAARKIFADAGVAHYWELAINFSDDQT
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggagcgcctctcggagagagagagaccaagcaagcgtgccagagaggatcttgaccac
cgcgatcgggaccacaagcaccgatcctccaaggacgagaagcgccgcgagtctgatcac
caccaccgtcaccgatctcggcttggtcactctcacaacgagcgcgaaggtagcagagac
cgggattcgaagcttgagcgttcttacgacgacgagagggaaagggaagggagcagagag
agagaccgtcctaagcatcgcggagtgaaacgcgggctgttggatgccgatgacgaggat
cttcgcgagggatctgacgagggggagggttcgttggagaggcgccactcgcattcgcac
aagcggaaggagagaggagtaagcgaagagaggagtgatggtggcgagaagaaggctagg
gtttcggggagaaggcggtttgaggacagggacgaattagatggagaagagaggaaggaa
aggaatgacaggaggcttgaggatagagtggaaaaagaagagggggatgaaaatgatagc
gattttgaatacaggaagcgagtggatgggagtgaattgaaggttcgggtgaaggaagag
gtgagtgacgaagagcatctctgtaagccccggagcgccaacaccgcgaatgctaatggt
ttatcgggaaatggtgctgctctggaatcactcaccatggagtccaggagtgtgcctgag
tcctatttcccccctagtcatcacattcctacaaaggtatcttcaatttctaccacaaat
gaaaataagggagttattattaccagatctcatgaggttcctggaaaatctagtacagat
gggacatcttcagctgctggaaaaagtggaagtctatctcttgatgctttagctaaagct
aagaaagctttacaaatgcaaaaagatttgtcagagaagctgaagaagattccctttttg
aacaagggttctagctcaattccagatggtagcttacgcttggaattgaaggagggactg
aaagcaccatctgtcattagtggaacagggcaagggccaaatgttttgactgcccctacc
aatgtttcagaggggatgacatctacttcattgaccttaccttctgcatctgctgcagct
tttgtgaagccaccagtcactggtcctagtgcttctgcaggcctcacgactctacccaat
attgaggcagtaaaacgtgcacaggaacttgctgccaggatggggtttcgtcaggacccg
gagtttgctcctctcataaacctatttccaggtcagacggcggcaacagagttcgttgtt
ccgcagaagccaaccaaggcccctgttcttcgtcttgatgcacttggtagagagatagat
gaacatggaaatgtggtgaatgtgacaaaaccaagcaacctcagcactttaaaggtcaac
attaacaaacagaaaaaggaagcttttcagattcttagacctgaattggatgttgatcca
gagacaaatcctcattttgatgaaaggatgggtattgacaaaactaagcttctaaggcct
aagaggatgactttccagtttgttgaagaaggcaagtggtcaaaagaggccgagcatatt
aaattgaagagtaaatttggagaagcacaggcgaaagagcagaaagcaaaacaggcacag
ttggctaaggcaaaggcagcacctgatattaatccaaatctgattgaggtagcagagaga
attatcatcaaagaaaaacctaaggacacgattcctgaaatcgagtggtgggatgcgact
cttttgcaagctggtgcttatggtgacatagtagatggaaccatggtagaagataaactg
aagaaggagaagatcactatctatgtacaacacccacgtccgattgagcccccggctgag
ccagctcctacaccacctcaacccttgaagttaaccaagaaggagcagaagaaacttcgt
actcagcgacggctggctagggagaaagataagcaagagatgattaggcaaggcctgatt
gagcctccaaagccaaaagttaaaatgagcaatttgatgaaagttcttggttctgaagcg
acccaagatccaactaggcttgaaaaggaaatcaggagtgcagctgctgaacgggagcaa
gctcacattgacaggaatattgctcgcaaactcactcctgctgagcgccgtgaaaagaaa
gagcggaagctttttgatgagccaaatacagtggagaccaatgtatcagtttaccggatc
aatgacctgtcacacgtacagacccgcttcaaaattgatgttaatgcccaagagaaccgc
ctgactggatgtgctgtgatctctgatggtattactgttgtggttgttgaaggtggaaac
aagtccataaagaggtatggaaagctcatgcttaggcgcataaactgggctactgctgta
aaagaggaggatgaagatggtgatgataaacctgctaagaggtgtgtcttagtctggcaa
ggaagtgttgccaaatcgagtttcaacagatttactgttcacgagtgtatgactgaagct
gctgcacggaagatctttgccgatgctggtgttgctcattactgggagctagccattaac
ttttcagacgatcaaacatag
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