Carya illinoinensis (pecan): 122301364
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Entry
122301364 CDS
T08745
Name
(RefSeq) spliceosome-associated protein 130 A-like isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122301364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122301364
03041 Spliceosome [BR:
cill03041
]
122301364
03036 Chromosome and associated proteins [BR:
cill03036
]
122301364
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
122301364
Spliceosome [BR:
cill03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122301364
Complex B
122301364
Complex C
U2 SnRNP specific factors
122301364
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
122301364
TFTC complex
122301364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
122301364
NCBI-ProteinID:
XP_042968582
LinkDB
All DBs
Position
2:complement(35521969..35528498)
Genome browser
AA seq
1213 aa
AA seq
DB search
MYLYSLTLQRATGIVCAINGSFSGGKTQEIVVARGKLLELLRPDDSGKIQTLLSVEIFGV
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKEKNVFDKIHQETFGKSGCRRIVPGQYL
ATDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDLRAVIPRRVDLPAERGVLIVSAAVHKQKAMFFFLLQ
TEYGDIFKVTLDHDNDRVTELKIKYFDTIPVTSSMCVLKSGHLFAASEFGNHAFYQFQGI
GDDADVESSSATLMETEEGFQPVFFQPRRLKNLLRIDQVESLMPIMDMKVANLFEEETPQ
IFTLCGRGPRSSLRMLRPGLAISEMAVSELPGVPSAVWTVKKNVNDEFDAYIVVSFSNAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIAKVGSNRLQVVIALSGGEIVYFEVDITGQLIEVDKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPEDGMQILSVQSVSSAPESLLFLEVQASIGGEDGADHPASLFL
NSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSIIVRGKRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFASDQCAEGVVAVAGDALRVFTIERLGETFNETVIPLRYTP
RKFVLQPKRKLLVIIESDQGAFAAEEREAAKKECFEAVGTGENENGNMEQMENGGDEDKD
DPLSDEHYGYPKAESDRWVSCIRVLDPKTATTTCLLELQDNEAAFSICTVNFHDKEYGTL
LAVGTAKGLQFWPKRSLAAGFIHIYRFLEDGRSLELLHKTQVEGVPTALCQFQGRLLAGI
GNVLRLYDLGKRRLLRKCENKLFPNSIVSIHTYRDRIYVGDIQESFHYCKYRRDENQLYV
FADDSVPRWLTASYHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLN
GAPNKVEEIVQFHIGDVVTCLQKASLIPGGGECLIYGTVTGSLGALLAFTSRDDVDFFSH
LEMYMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDLQRKIADELDRTPGE
ILKKLEEVRNKII
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctcactctccagcgagccaccggcatagtctgcgccatcaacgga
agtttctccggcggcaagacccaagagatcgttgtcgcccgcggcaagctcctcgagctt
cttcgacccgacgacagcggtaagatccaaacgcttctctccgttgaaatttttggcgtc
attaggtctttagctcagtttaggcttactgggtctcagaaagactatattgttgtcggg
tccgattccggtcgtatagttatcctcgagtacaacaaggagaagaatgttttcgacaaa
attcaccaagaaactttcggcaaatcgggctgtcgtagaatagttccgggccagtacttg
gccactgatccaaagggtagggcggtgatgattggggcttgtgagaagcagaagcttgtt
tatgtgttgaatagggatacggcggcgaggctgaccatttcctcgccattggaggcgcat
aaatcgcatacgatagtgtattctatctgtggagttgattgtgggttcgataacccgata
tttgctgccatagagttggattactcggaggcagaccaggattcaactgggcaggcagca
agtgaggcccagaagaatttgactttttatgagcttgacttagggcttaaccacgtatcc
aggaagtggtcggagccagttgataatggtgctaacttacttgttactgttcccggagga
ggggacgggccgagtggtgtgttggtttgtgcggaaaactttgtgatatataaaaatcag
ggacacccggatcttagggctgtgattcctagacgagtagatctgcctgctgagcgaggg
gttcttatagtttcagcagcagtgcataagcagaaagcgatgttcttctttctgttgcaa
acagagtatggggatatttttaaggttactttggaccatgacaatgaccgtgttacagag
ttgaagattaagtactttgatacaattccggttacttcctccatgtgtgtgctgaagtca
gggcacttgttcgctgcttcagaatttgggaatcatgctttctatcagttccaaggtata
ggtgatgatgctgatgtggagtcttcatcggctacattgatggaaacagaagaaggtttc
cagccagtgtttttccagcctagacgacttaagaaccttctcaggattgaccaagtggag
agcctaatgccaataatggacatgaaagtggctaatctctttgaagaagaaacaccccag
atatttacgctttgtgggcggggccctcgttcgtctcttagaatgttaaggcctggttta
gctattagtgaaatggctgtgtcagagcttcctggtgtgccaagtgcggtttggactgtg
aaaaagaatgttaatgatgagtttgatgcatacattgtggtgtcattctcaaatgcgact
ctcgttctttccattggtgagacagttgaagaagttagtgatagtgggtttcttgatacc
accccctcacttgctgtttctttaattggtgatgactctctcatgcaagttcatcccaat
ggcattaggcatattagggaggatgggcgtatcaatgagtggaggactcctggaaagagg
acaattgctaaggttggctctaacagacttcaagtggtcattgcacttagtggtggtgaa
attgtgtattttgaggtggatatcactggccaattgattgaagtggataagcacgaaatg
tcaggtgatgtggcttgtttggacattgcccctgtacctgaaggaaggcaaagatctcgt
ttccttgctgttggttcatatgacaacacaattcgtatcttatcattggaccctgaagat
ggtatgcagattctgagtgtgcaaagtgtttcttcggctccagaatctctcctttttctc
gaagtccaggcatcaataggtggggaggacggtgctgatcatcctgccagcctttttctt
aattctggtttgcagaatggagttctatttagaacagttgtagatatggtgactggtcag
ctttctgattcccggtctcgtttcttgggactgagagccccaaagcttttttctattata
gtacgaggcaagcgtgccatgctttgcttgtcaagtcgaccttggcttggctatattcac
caaggacattttcttttaacacctttatcatatgagactcttgaatatgcagcatcattt
gcctctgaccaatgtgcagaaggtgtagttgctgttgctggtgatgctttgagggttttt
actattgagagactgggagaaacatttaatgaaactgtaattcccctaagatacacacca
agaaagtttgtgcttcaacccaagcgaaaattgctggtaattattgagagtgatcaagga
gcattcgcagctgaagagcgtgaagctgcaaaaaaggagtgctttgaggctgttggaact
ggggaaaatgaaaatggtaatatggagcagatggagaacggtggtgatgaggacaaagat
gatcccctctcggacgaacactatggctatcccaaggctgaatcagacaggtgggtttct
tgcattagagttcttgacccaaagacagctactacaacttgtctgctggagcttcaggac
aatgaagctgcgttcagtatatgcacagtgaatttccacgataaagaatatggaactctt
ttagctgttggcactgcaaagggactacagttttggcccaaaagaagtttagctgctggt
tttattcatatttataggtttttagaggatggaaggtcacttgaactattgcacaagaca
caagtagaaggcgttccaactgctttgtgccagtttcaaggacgattacttgcaggtatt
ggaaatgttctcagattatatgatttgggcaaaagaagattgcttagaaaatgtgagaac
aaactgttccccaacagtattgtctccattcacacttatcgtgatcggatatatgttggc
gacattcaagagtcattccattactgtaagtacagacgtgatgagaatcaactgtatgta
tttgccgatgatagcgttccaagatggcttactgcatcataccatatagattttgacacc
atggcaggtgcagacaagtttgggaacatttattttgtgcggttaccacaggatgtgtcg
gatgagatagaagaagatccaaccggggggaaaataaaatgggagcaggggaagctgaat
ggagctcccaacaaggtagaggagatagtgcagtttcacattggtgatgtggtcacctgc
ttgcagaaggcatctctaattccaggtgggggagagtgcctcatatatggcactgtgacg
gggagcttgggagcattgctagcattcacctctcgcgatgatgttgacttcttttctcac
ttggagatgtatatgaggcaggaacatccacctttgtgtggaagagatcacatggcttat
agatctgcttactttcctgttaaggatgtgatcgatggggatctgtgtgaacagttccca
actctgcctctggatttgcaaaggaaaattgccgatgaattagatagaactcctggggag
atactgaagaaacttgaagaagttcgaaataagatcatttga
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