Carya illinoinensis (pecan): 122302378
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Entry
122302378 CDS
T08745
Name
(RefSeq) suppressor of mec-8 and unc-52 protein homolog 1 isoform X1
KO
K13111
WD40 repeat-containing protein SMU1
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122302378
Spliceosome [BR:
cill03041
]
Complex B
Other components
Complex B specific factors
122302378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WDR55
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
LisH_TPL
WD40_Gbeta
Beta-prop_EML
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_ACSF4
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_NWD2_C
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_Nup120_160
Ge1_WD40
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_2nd
VPS8_N
Beta-prop_LRRK2
Beta-prop_HPS5
DUF7165
Beta-prop_WDR19_1st
Beta-prop_IP5PC_F
PROPPIN
WD_LRWD1
Beta-prop_IFT122_2nd
zf_topless
Motif
Other DBs
NCBI-GeneID:
122302378
NCBI-ProteinID:
XP_042969534
LinkDB
All DBs
Position
3:complement(1773800..1784831)
Genome browser
AA seq
513 aa
AA seq
DB search
MSTLEIEARDVIKIVLQFCKENSLHQTFQTLQNECQVSLNTVDSVETFVADINSGRWDAI
LPQVAQLKLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQVMGVMKQEQPERYLRLEH
LLVRTYFDPNEAYQDSTKEKRRAQIAQALAAEVTVVPPSRLMALIGQALKWQQHQGLLPQ
GTQFDLFRGTTAMKQDVDDIYPTTLQHTIKFGTKSHAECARFSPDGQFLVSCSVDGFIEV
WDYISGKLKKDLQYQADETFMMHDDPVLCVDFSRDSEMLASGSQDGKIKVWRIRTGQCLR
RLERAHSQGVTSLVFSRDGTQLLSASFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTTD
GSRVITASSDCTVKVWDAKTTDCLQTFKPPPPLRGGDASVNSVHLFPKNADHIIVCNKTS
SIYIMTLQGQVVKSFSSGKREGGDFAAACVSPKGEWIYCVGEDRNMYCFSCQSGKLEHLM
KVHEKDVIGVTHHPHRNLVATYGEDCTMKLWKP
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccctagaaattgaagccagagatgtcatcaagattgtgctccaattttgcaaa
gaaaattctttgcaccaaacttttcagacgttacagaacgagtgccaggtttctttgaat
actgtggacagcgtggagacatttgttgccgatataaatagtgggaggtgggatgcgata
ctgcctcaagtggctcagcttaagctgcccaggaataaattggaggatttgtatgagcag
attgtattagaaatgattgaacttcgagagttggataccgcacgagctattttaaggcaa
actcaggtgatgggtgtcatgaagcaagagcaaccggaaagatatttgagacttgaacat
ctcctagtcagaacttactttgatccaaatgaggcttaccaagattcaacaaaggaaaaa
cgccgtgcacaaattgcccaagctcttgctgccgaagttactgtggtgccaccttcacga
ttaatggctctgattggtcaggctctgaagtggcagcagcaccaaggtttacttccacaa
ggaacacagtttgacttatttcgaggaaccactgctatgaaacaagatgtagatgacata
tatccaacaactcttcaacacacaataaagtttgggacaaaaagtcatgcagaatgtgcc
cggttctcaccagatggacagtttctcgtctcatgctctgttgatggatttattgaggtc
tgggattacatcagtgggaagctcaagaaggatcttcagtaccaggctgatgaaacattc
atgatgcatgatgatccggtgctttgtgttgactttagcagagattctgagatgcttgca
tctgggtcacaggatggaaagattaaagtttggcgtataaggactggtcaatgcttgcgc
cgtcttgaacgtgcacattctcagggtgtcaccagtcttgtcttctctcgagatggaacc
cagttactaagtgcatcatttgacagcacagcaagaattcatggcttgaaatctgggaag
ttgttgaaagaatttcgtggccattcgtcttacgtgaatgatgctatctttacaacggat
gggagtcgtgttattactgcatccagtgattgcactgtgaaggtctgggatgcgaagaca
acagactgtctacaaacatttaagccgccgcctcctctacggggtggagatgcttctgtg
aattctgttcatcttttccccaaaaatgctgatcacattattgtatgtaataagacatca
tcgatctacattatgacacttcaaggacaggtcgttaagagtttctcatctggtaaaaga
gaaggtggagactttgctgctgcctgtgtgtcaccaaaaggggaatggatttattgtgtt
ggtgaagacaggaatatgtactgcttcagctgccaatctggtaaactagagcatctaatg
aaggtccatgaaaaagatgtaattggcgtcacgcatcatccacacaggaaccttgttgct
acctatggtgaagactgcacaatgaaattgtggaagccttga
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