Carya illinoinensis (pecan): 122302605
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Entry
122302605 CDS
T08745
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122302605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122302605
03009 Ribosome biogenesis [BR:
cill03009
]
122302605
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122302605
Spliceosome [BR:
cill03041
]
Complex A
U1 snRNP components
U1 related factors
122302605
Complex B
122302605
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
Pre-60S particles
Helicases
122302605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122302605
NCBI-ProteinID:
XP_042969869
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All DBs
Position
3:3892271..3903619
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AA seq
713 aa
AA seq
DB search
MAAAMTVSSTGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTGSVPPXIS
SSVLVQQSSQGQLCGYSPDDNGSYGRGSNGGSKLEVESRMQQNTRGETVHSSNIANGTLG
AGPGGSSTRVHGASDIGVGFSAESYRRRHEITVSGDNVPPPFMSFEATGFPSEILREVHN
AGFSAPTPIQAQSWPIALQSSDIVAIAKTGSGKTLGYLIPGFIHLKRCRNNPQLGPTVLV
LSPTRELATQIQDEAVKFGKSSRILCTCLYGGAPKGPQLRDIERGSDIVVATPGRLNDIL
EMKRISLHQVSYLVLDEADRMLDMGFEPQIRQIVKEVPHRRQTLMYTATWPKEVRKIAAD
LLVNPVQVNIGNVDELVANKSITQHVEVLAPMEKHRRLEQILRSQEPGSKIIIFCSTKKM
CDQLARNLTRQFGAAAIHGDKSQGERDHVLSQFRNGRSPILVATDVAARGLDVKDIRAVI
NYDFPTGVEDYVHRIGRTGRAGATGLAFTFFGDQDAKYASDLIKVLEGANQRVPPEIREL
ASRGGGIGRSRRWGSGSGFGGRDGGRGGRNDSGHIGRSGGRGYEHESHERYDRGYSYGQD
RGRSRSPSPNKGSAWGERSKGWNRDRSRSRDRSPVRSFHQAMMERGRSSPPHQQQRVPPY
NSGNAREPKGSPQGWGRSSGGGQDDGRFANGPHSSYFGEEEEEGLIPQDEVDK
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagctatgactgtctcttccacaggtccgcgatatgcacccgaggaccccacg
cttcccaaaccatggagaggccttgttgatggtaaaactgggtacctttacttttggaat
cctgagacgaatgtcactcaatatgagaggcctacagggtcagttcctcctnctattagt
tcttctgtattagttcaacaatcttctcaaggacagctttgtggctacagtcctgatgac
aatggtagttatggcaggggcagcaatggtgggtcaaagctcgaggttgagtcaaggatg
cagcagaatacaagaggtgaaactgtccattccagtaatattgcaaatgggacacttggt
gctggacctggtggatcttctacacgagtacatggagcttcagatataggagttggtttt
tctgcagagtcttatcgtcgccggcatgaaataactgtttctggtgataatgtgcctcca
ccttttatgtcatttgaagctactggctttccatctgagattcttagagaggtacacaat
gctgggttctctgccccaactccgattcaggcacaatcatggccgattgctcttcaaagt
agtgacatagtggccattgctaaaaccggttcagggaaaaccttgggttacttgattcca
ggatttattcatctcaagcgctgccgtaacaaccctcaattgggtccaactgtgttggtt
ttgtcgccaactagggagttggcaacacagatacaagatgaagctgtgaagtttggaaag
tcatcaagaattttgtgcacgtgtttatatggaggagctccaaagggaccccagttgaga
gatatagaaagaggatcagatatagtggttgctacccctggtcgcttgaatgatattctg
gagatgaagagaattagccttcatcaagtttcttacctcgtgcttgatgaggctgatcgc
atgctcgacatgggttttgaacctcagataaggcagattgtaaaggaggtgcctcatcgc
cgccaaaccctcatgtatacagcaacatggccaaaggaggttcggaaaattgcagcagat
ctgctcgtcaatcctgttcaggttaacatcggcaatgtggatgagcttgtcgcgaacaag
tccatcacacagcatgttgaagtattggcacccatggagaaacacaggcgattggagcag
atactgcgatctcaagaaccaggatcaaagataatcatcttttgttcaaccaagaagatg
tgtgaccaacttgcccgcaatcttacccgccagtttggcgctgctgccattcatggagac
aaatctcagggtgagagggatcatgtgttgagtcagtttcgaaatggtaggtctccaatt
cttgtagccaccgatgttgctgctcgaggactggacgtcaaggacatcagggcggttatc
aactatgatttccctacaggagtagaggattatgttcataggattgggaggacggggagg
gcaggtgccacaggtctggcttttacattctttggtgaccaggatgccaaatatgcttca
gatctcatcaaagttttggaaggggcgaatcagcgagtccccccagaaattcgtgagctg
gcatcccgtggtggtgggataggtaggtcaagacgttggggttctggttctgggttcggt
ggtcgtgatgggggccgtggtggacgtaatgattcaggtcatattggaagaagtggaggc
cgtggatatgagcatgagtcacatgagaggtatgatcgtggttacagctatggacaagat
agaggtcgcagtcgcagccccagccctaacaagggttctgcctggggtgaacgcagtaaa
ggttggaaccgtgatcgtagccgtagtcgtgaccgctccccagtgcgcagttttcaccag
gcaatgatggaacgagggaggtcatccccaccacatcaacagcagcgtgtgccaccttac
aacagtgggaatgcaagggaacccaagggttcaccacaggggtggggcagatcctcgggt
ggtgggcaggatgatggaagatttgccaatggacctcactcttcttattttggagaagaa
gaggaggaaggcttgatacctcaggatgaggttgacaagtag
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