Carya illinoinensis (pecan): 122303078
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Entry
122303078 CDS
T08745
Name
(RefSeq) sister chromatid cohesion protein SCC2
KO
K06672
cohesin loading factor subunit SCC2
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cill03036
]
122303078
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
122303078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
PHD_2
zf-RING_16
Pex24p
Cas12f1-like_TNB
Motif
Other DBs
NCBI-GeneID:
122303078
NCBI-ProteinID:
XP_042970559
LinkDB
All DBs
Position
3:8955247..8973519
Genome browser
AA seq
1815 aa
AA seq
DB search
MSNPIVPGSLISASGSGSGWGHRGIGLSNTIHSEVAPCLPLPSLPVFCGASNQDLRLFDE
PGRGSFSSLDRSEVLAQSSRIADLLRQTDVSYLNLKKDARVVSYGYAEPLELHDQVLQCH
PEAFECSTAGPIKEQISSGTVSEKKPFEQSVPVTVQAQRDNSATHNYHTGYVVNNHVSTS
SSRKPKLKKKGGDDFSSSVGLDHAEIQDATIRSFCELLEDFCGRAEIPSDDRDEAEWLSV
PLSDLRMLVAEIMSIRAKKLLHLVPVDALVRLFKVLDHQIHRAEGLSIDECEHSDSDVVS
SIFCALESIHAALAVMSYNEMQKQLYKEEIIERILEFSRHQVMDVMCAYDPSYRALHKPS
ENGEFEGDEDEDPGPEIGSASKKRRSIKTVRVKKSSLNKVSAAMNTILQKMCTILSLLKD
LLLMERLSDSCILQLVKTSFTTFLVDNIQLLQLKAIGLISGIFYSYTQHRTYVIDEILQL
LWKLPSSKRALRSYHLPDEEQRQIQMITALLIQLVHCSANLPEALRQATSGNPILEVSVD
SSYPTKCQESATEACCLFWTRVLQRFASLKTQDASEMKAMMENLVMDLLTTLNLPEYPAS
APILEVLCVLLLQNAGLKSKDISARTMAIDLLGTIAARLKRDSVLCRMDKFWILQELDNA
SDVDRSYPKGSCSICLDGRVEKLFFTCQSCQRLFHADCMGVREHEVPNRSWQCQICICRK
QLLVLQSYCKSQCKDGGKKTHNLSEKNPEAPDTAEIVQQLLLNYLQDVGSDDVHLFVRWF
YLCLWYKDDPKSQQKFIYYLARLKSKAIIRDSGTTSLLTRDSVKKITLALGQNNSFSRGF
DKILHMLLASLRENSPVIRAKALRAVSIIVEADPEVLCDKRVQLAVEGRFCDSAISVREA
ALELVGRHIASHPDVGLQYFEKVAERIKDTGVSVRKRAIKIIRDMCTSNGDFSGFTSACI
EIISRVSDDESSIQDLVCKTFYEFWFEEPSGSERLVFGDGSSVPLEVAKRTEQIVEMLRR
MPNHQLLVTVIKRNLALDFFPQSAKAAGINPVSLTSVRKRCELMCKCLLEKILQVEEMNS
EEVEVRALPYVLVLHAFCVVDPKLCAPASDPSQFVVTLQPYLKTQVDNRMIAQLLESVIF
IIDSVLPLLRKLPQTVVEELEQDLKHMIVRHSFLTVVHACIKCLCSLGKVAGKAASVIEY
LIQVFFKRLDTQPADNKQQVGRSLFCLGLLIRYGKSLLSDSSNRSIDVVSSLSLFKKYLR
VEDFIVKVRSLQALGFVLIAWPEYMLENDIGKILEATLSSGCDVRIKMQALQNLYEYLLD
AESQMGTDKASNNTIHYSVEGGHSVPVAAGAGDTNICGGIVQLYWDNILGRCLDFNEPVR
QSALKIVEVVLRQGLVHPITCVPYLIALETDPQEVNSKLAHHLLMNMNEKYPAFFESRLG
DGLQKSFIFIQSISGIHENVNQKVQSKVPGNVKGKPDGGSFAQARLGVSRIYKLIRGNRV
SRNKFMSSIVRKFDNPSWNDSVVHFLMYCAEILALLPFTTPDEPLYLIYAINRVIQVRAG
ALEANMKGLSMYLSQRYMEKTSYENGQQELVVKPDFNEVSSMDLNGAIQHEPGGQPIFNH
TVDLNESIRHETTDQPVPNHSISLEAKIHSMGSDVSIVLSADDLRKVQADCLAATALQLL
LKVKRHLKIVYSLNDARCQAFSPNEPAKPGEVLSRQNIPFAIGEIRTSLPTTHQELIQRY
QEFKSSLKEDVIDYSLYTANTKRKRPAPRKGRKSGYMGGGEDDEDDHDDDDWTGGVRRLS
NSGRKGNSNRGSRQR
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatccaatcgttcccggttctttgatttccgcctccggctccggctccggctgg
ggtcaccgcggcatcggcctctccaacaccatacactctgaagtcgcgccgtgcttgcct
ttgccctcgcttccggtcttctgcggcgcatctaaccaggacctccgactcttcgacgag
cctggacgtggtagcttcagctcgcttgaccgcagtgaggttcttgctcagtccagtaga
atcgctgatctgcttcgccaaaccgatgtgtcttacttgaatctcaaaaaggatgcaagg
gtagtttcatatggctatgcggaacctttagaactacatgaccaagttttgcaatgccat
ccagaagcatttgagtgtagtactgcaggtcctattaaggagcaaatatctagcggtacg
gtatctgaaaagaagccctttgaacaaagtgtacctgtcacagttcaagctcaaagagac
aatagtgctactcacaattatcatactggttatgttgttaacaatcatgtatcaacatcg
tcttctagaaaaccaaaactcaagaagaaaggtggcgatgacttttcatcatcagttgga
ctggatcacgctgagattcaagatgccaccatcagaagcttttgtgagttgttagaggac
ttctgtggtagagctgaaattcctagtgatgatcgggatgaagcagagtggttatcagtt
cctctttctgatcttagaatgcttgtagctgaaataatgtctatccgtgcaaagaaactt
ctacatttggttcctgtagatgctcttgttaggctgtttaaggttctagatcatcagata
catcgagcagaaggcttgtccatagatgaatgcgaacactcagattcagatgtagtttca
tcgatcttttgtgctctggagtctattcatgctgctctagcagtgatgagttacaatgaa
atgcaaaagcagctatataaagaagagataattgaaagaattctggagttctctaggcat
caggttatggatgttatgtgtgcgtatgatccatcatatcgtgctttgcataaaccaagc
gaaaatggagaatttgaaggggacgaagacgaagaccctggtcctgaaattggttcggca
agcaagaagcggcgtagcattaagactgttcgagtgaagaagtcatcattaaacaaggtc
tctgctgcaatgaatactattcttcagaaaatgtgcaccattcttagtttactcaaggat
ttattgttaatggagagattatctgatagttgcatcttacaacttgtgaaaacaagcttc
acgacattcttggtggataatattcaactcttgcaactgaaggcaattggtttaattagt
gggatattctattcatatacacagcatcgtacttatgtgatagatgaaatacttcagctg
ctttggaagttaccatcctcaaagcgagcgctaagatcctatcacctacctgatgaagaa
caaaggcagattcagatgataacagctttgctgattcagttggttcactgtagtgcaaac
cttcctgaagctttaaggcaagcaacaagtggcaatcccattttagaagtctcagttgat
tctagttacccgaccaaatgtcaagagtcagccacagaggcatgttgtcttttttggacc
cgtgtgcttcagcgttttgcgagtttgaagactcaagatgcatctgagatgaaagcgatg
atggagaatcttgttatggatttgctgacaacattgaatttgcctgaatatcctgcttca
gctcctattttggaggttctatgcgtcttgttacttcagaatgctgggctgaaatctaaa
gacatctctgcacgtacaatggccattgaccttcttggtacaatagctgcgagattgaag
cgtgattctgtgctttgcaggatggacaaattttggatactacaggaattggataatgcc
agtgatgttgatcgcagttatccaaaaggttcgtgttctatttgtttggatggaagggtt
gaaaagttgttctttacatgtcaaagttgtcagaggttgtttcatgctgactgcatgggt
gtaagagagcatgaagttcctaatagaagctggcagtgtcagatttgcatctgcaggaag
caacttctcgtattacaatcatactgtaagtcgcaatgcaaggatggtgggaaaaagact
cacaatttgtcagaaaagaaccctgaagctcctgatacagctgaaattgttcaacagctg
ctattgaattacctgcaagatgttggttctgatgatgttcatctctttgtgcgctggttt
tatctttgcttgtggtacaaggatgatccaaaatctcagcagaagttcatatactatctt
gctagattgaaatcaaaagcaataatacgtgattctggaactacttcattgttgacaagg
gattcagtcaagaagattactttggcattgggacaaaataactccttctccagagggttt
gataagatccttcatatgcttctggcaagtttgagggagaattctcctgtaattagggcc
aaggctctaagagcggttagtattattgtagaagctgatcctgaggtactgtgcgataaa
cgtgtgcaattggctgttgagggaaggttctgtgattctgcaatatctgtaagggaagca
gcactggaacttgtgggcaggcacattgcttcacatcctgatgttggtttgcagtacttt
gagaaggttgctgagagaattaaagatactggagttagtgttcgaaaacgagctatcaaa
attattcgggatatgtgcacttcaaatggcgacttctctggatttacaagtgcctgtatt
gagataatttctcgtgttagtgatgatgaatcaagtattcaggatcttgtttgcaagaca
ttttatgagttctggtttgaggaaccttctggttcagagagacttgtttttggagatggt
agttctgttccactggaggtggctaaaagaaccgagcagattgttgaaatgttgaggagg
atgccaaatcaccaacttcttgtcactgttattaagcgcaacttagctcttgattttttc
ccacaatcagctaaggctgctgggatcaaccctgtgtccctaacatcggtgcgcaaacgt
tgcgagttaatgtgcaagtgcttattggaaaagatattgcaggtagaggaaatgaacagt
gaggaagtggaggtgcgtgcactcccttatgtgctggtcttgcatgcattttgtgttgtg
gatccaaaactctgtgcccctgcctctgatccttctcagtttgtggttaccctacagcca
tatcttaagacccaggttgacaaccgaatgattgctcagttactggagagtgtaattttt
ataattgattctgttctaccattgctccgaaaattacctcaaactgttgttgaagaactc
gagcaggacttgaagcacatgattgttcgtcattcctttttgacagttgtccatgcatgc
atcaagtgtctttgctctttgggcaaagttgcaggaaaagctgctagtgtgattgagtat
cttattcaggtgttttttaaacgtttggacactcagccagctgataacaagcagcaagtg
gggcggtcccttttttgccttggattgcttatacgctatggaaaatctttgctgagtgac
tccagtaacagaagtattgatgtggtcagtagtctcagcttgttcaaaaaatatcttcgc
gtggaggatttcattgtgaaggttagatcattgcaggcgttaggctttgttctaattgct
tggcctgaatatatgttggaaaatgatattgggaaaatactagaggcaactttgtcttct
ggctgtgatgttcgaattaagatgcaagcgttgcaaaacttgtatgaatatcttcttgat
gcggaaagtcaaatgggaacagataaagcaagcaacaatacaattcattattctgtagaa
ggtggccacagtgtacctgttgctgcgggtgcaggagatactaatatatgtgggggtata
gttcagttgtattgggataatatcttaggtagatgtttggacttcaatgaaccggttcgg
caatcagcccttaagattgttgaagttgtgctgcgccagggtcttgttcatccaattact
tgtgtcccgtaccttatagcccttgaaacagatccgcaagaagtcaattcaaagttggct
catcatttgttgatgaatatgaatgagaagtaccctgcattttttgaaagccgtttgggg
gatggccttcaaaagtcattcatttttatacaatcaataagtggtattcatgaaaatgta
aatcagaaagtccaatctaaggtcccaggaaatgtgaaggggaaacctgatggtggctcg
tttgctcaagcaaggcttggagtctctagaatatacaagcttatccgtggaaaccgagtt
tcaagaaacaaatttatgtcctcaattgtgcggaagtttgataaccccagctggaatgat
tctgtagtccatttcctgatgtactgtgctgaaatacttgctttgctaccattcactaca
cctgatgagccactatatctgatctatgctataaatcgagtaatacaagtcagggctggg
gcacttgaggcaaatatgaaaggtttgagtatgtatttgtcacaaagatatatggagaag
acatcttatgagaatggacaacaggagcttgttgttaagcctgacttcaatgaggtttct
tcaatggatttgaatggggcaattcaacatgagccaggtggtcagcctattttcaaccat
accgtagatttgaatgagagtatacgacacgagacgactgatcagcctgtcccaaaccat
agcatctcactggaggcaaagatacatagcatgggctctgatgtttctattgttctttct
gcagatgatctgcggaaagttcaggctgactgtctggcagctactgcgttgcagcttctt
ttgaaagtaaagaggcacctaaaaattgtgtatagcctgaatgatgcccggtgccaggct
ttttccccaaatgaacctgcaaaacctggtgaggttctctccagacagaacattcccttt
gccattggtgaaatacgcactagtttgcctaccactcatcaagaattgatacaaagatat
caggaattcaagagttctctgaaggaagatgtgattgattattcgctttacacagcaaat
accaagaggaagcggcccgcccccagaaaaggacggaaatccggatacatggggggaggt
gaagatgatgaagatgatcatgatgatgatgattggacaggtggggttcgcaggctaagt
aatagcggcagaaaaggtaacagcaacaggggaagtaggcagcgatga
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integrated database retrieval system
