Carya illinoinensis (pecan): 122303359
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Entry
122303359 CDS
T08745
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03030
DNA replication
cill03410
Base excision repair
cill03420
Nucleotide excision repair
cill03430
Mismatch repair
cill03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122303359
03410 Base excision repair
122303359
03420 Nucleotide excision repair
122303359
03430 Mismatch repair
122303359
03440 Homologous recombination
122303359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cill03032
]
122303359
03400 DNA repair and recombination proteins [BR:
cill03400
]
122303359
Enzymes [BR:
cill01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
122303359
DNA replication proteins [BR:
cill03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
122303359
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
122303359
MMR (mismatch excision repair)
DNA polymerase delta complex
122303359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
divDNApol
Motif
Other DBs
NCBI-GeneID:
122303359
NCBI-ProteinID:
XP_042971048
LinkDB
All DBs
Position
3:complement(13522877..13552332)
Genome browser
AA seq
1089 aa
AA seq
DB search
MSKNGNTRKRPPPPPQPSPAQTPKHHAASQEDDFLDEDVFLDETLLLEDEDEEILRDIDD
RRARAARLAKWSRPPLSDAYVSQSRSILFQQLEIDYVIGESHKELLPKSAGPAAIIRIFG
VTREGHSVCCHVHGFEPYFYISCPAGMGPDDISRFHQTLEARMKEVNRNGKVPKYIRRIE
LVEKRSIMYYQQQTSHPFLKIVVALPTMVTSCRGILDRGIQITGFGTKSFITFESNVLFA
LRFMIDRNIVGGNWIEVPAGKYKKTAKNLSYCQLEFDCLYSELISHSPEGEFSKMAPFRV
LSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEDQPFIRNVMTLNTCSSIVGVDVMSFD
TERKVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAETLGIAEFPILGRIRNSRVRVK
DTTFSSRQMGTRESKEVTVEGRVQFDLLQAIQRDYKLSSYSLNSVSAHFLSEQKEDVHHS
IISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQS
IKVLSQLLRKAKQKGLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSI
MMAYNLCYCTLVTPENVRKLNLPQECVNKTPSGETFVKSNLQKGILPEILEELITARKRA
KADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEH
TKKLVEDKFTMLGGYEHNVEVIYGDTDSVMVQFGVDTVEAAMNLGREAAEYISGTFIKPI
KLEFEKVYYPYLLISKKRYAGLLWTNPDKFDKMDTKGIETVRRDNCLLVKNLVNECLHKI
LIDQDIPGAVQYVKNIIADLLMNRMDLSLLVITKGLTKTGDDYEVKTAHVELAERMRKRD
AATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPHYYLENQISKPLLRIFE
PILKNASRELLHGSHTRSISISTPSNSGIMKFAKKQLSCIGCKALISDKDRILCSHCKGR
EAELYCKTVAHVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEA
KLQLERWNF
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaacggcaacacccggaaacgcccgcccccgccgccccagccctcgccggcc
caaactcctaagcaccacgcggcatcccaagaggacgacttcctggacgaggacgtcttc
ctcgacgaaaccctcttactcgaggacgaggacgaggagatcctccgagacatcgacgac
cgccgggctcgcgcggcccgacttgccaagtggtcccgcccgcccctctccgacgcctac
gtttctcagtctcggagcatcctttttcagcaactggagattgattatgtgatcggggag
agtcataaagaactgttgcccaaatcagctggacccgccgccattatccgaattttcggt
gttactagggaagggcatagcgtttgctgccatgttcatgggtttgagccatatttttac
atcagctgccctgctggaatgggccctgatgatatctctcggtttcatcaaactcttgag
gcaaggatgaaagaggtgaatcggaatggtaaggtacccaaatatatccgtcgtattgaa
ttagtggagaaaaggagtattatgtactaccagcagcagacttctcatccttttcttaaa
atcgtcgttgcattgccaacaatggtgaccagctgccgaggtattcttgatagaggcata
caaattactggttttggcacgaagagcttcattacatttgaaagcaatgttctttttgct
cttcgttttatgattgaccgtaatattgttggtgggaattggattgaagttcctgctgga
aaatataagaagacagcaaagaatttgtcgtactgtcaattagagtttgattgcctgtat
tcagagctgatcagccattccccagaaggggaattctcaaagatggctccgtttcgcgta
cttagttttgacattgagtgtgctggtcgtaaaggtcattttcctgagcctacccatgat
cccgttatccaggtggccaatctagtaactttgcagggagaggaccagccatttattcgg
aatgtgatgacccttaacacatgctcttcaattgttggtgttgacgtgatgtcttttgat
acagagagaaaagttttgttagcttggagagactttatccgtgaagtggaccctgatatc
ataattggatataacatttgcaaatttgatttgccatatctcattgagagggctgagacc
ttgggaattgcagaatttccaatattgggccgcatcaggaatagcagagttcgggtcaaa
gatacaacattttcttcaagacagatgggaaccagggaaagtaaagaagtgacagtagaa
gggagggttcaatttgatttgctccaggctatccaacgggattataaattaagttcttac
tcattgaattctgtttctgcacacttcctttccgagcagaaagaggatgtacaccattca
ataatctctgatcttcagaatggaaatgctgaaaccaggagacggcttgctgtatattgt
ttgaaggatgcttatctcccacagcggcttttggacaaattgatgttcatctacaactac
gtggagatggctcgagtaacaggtgttcctatctcttttctgctttcaagaggacagagc
atcaaggtactttctcaacttcttcggaaggcaaagcaaaagggccttgtgattccaaat
gtcaaacaggcaggatctgaacaaggaacttatgaaggtgctactgttttggaggcaagg
gcaggattttatgagaagccgattgcaaccttggattttgcatccttgtatccatctatt
atgatggcatataatttatgttactgcactctggtgacgccagagaatgttcgcaaactt
aaccttccccaagaatgtgtcaacaaaactccatctggtgaaacatttgttaaatccaat
ttacaaaagggaatacttcctgaaattcttgaagaactgattacagctcgtaagagagca
aaggcagatttgaaggaagcaaaagatccacttgagaaggctgtgctagatggtcgacag
ctggccttgaagataagtgcaaattctgtatacggattcactggagctactgtcggtcag
ttaccttgcttagagatatcttcaagtgttacaagctatggtcgacaaatgattgagcac
accaaaaaacttgtcgaagataaatttacaatgcttgggggctatgaacacaacgttgag
gttatatatggggacacagattcagttatggtacaatttggggttgacactgtggaggct
gccatgaacttggggagagaagctgctgaatatattagtgggactttcattaaacctatc
aaactggagtttgaaaaggtttattatccatatctcttgattagcaagaagagatatgcc
ggtttgctatggacaaatccagacaagtttgacaaaatggacactaaaggtattgaaact
gttcgaagagacaattgtttgttagtcaaaaacctggtaaatgagtgcctacacaagatt
cttattgaccaggacattcctggggcagtccagtatgtgaagaatatcattgcagatctt
cttatgaaccgcatggatttgtcacttttggttatcactaagggtcttacaaagacagga
gatgattacgaagtcaagactgctcatgttgaacttgccgagcgtatgcgcaagcgagat
gctgctactgctccaaatgttggggatcgtgtaccttatgtcattattaaagctgcaaaa
ggtgccaaggcttatgagaagtcagaggatcccatctatgtccttgagaataacatacca
atagaccctcattactatcttgaaaatcaaataagcaagccacttctgagaatatttgag
ccgattttgaagaatgctagcagggaacttcttcatggaagtcatacaagatctatctct
atctctactccctctaacagtggtataatgaaatttgcaaagaagcaactcagttgcatt
ggctgcaaagctctaattagcgataaagatcgaattctgtgctcacactgtaaggggaga
gaagccgaactttactgcaaaacagtggctcatgtgtctgagctggagatgctttttggg
aggttgtggacacaatgccaagagtgtcaaggttctcttcaccaggatgtgctctgcaca
agtcgggattgtccaatattttatcggcgaaagaaggcacagaaagacatggctgaagcc
aagctacaattagagcggtggaacttctaa
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integrated database retrieval system
