Carya illinoinensis (pecan): 122303509
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Entry
122303509 CDS
T08745
Name
(RefSeq) uncharacterized protein LOC122303509 isoform X1
KO
K19026
spatacsin
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cill03400
]
122303509
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
122303509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
122303509
NCBI-ProteinID:
XP_042971249
LinkDB
All DBs
Position
3:16740331..16781147
Genome browser
AA seq
3258 aa
AA seq
DB search
MREALKISISMGSPSGGEGPAILQLNKWCPSQAQLNLSEFREAFISPTRHILLLLSYQRE
ALLLPLITGDSTHNNDLESSYAESSKYPGSFLKGSTVSSKSDSRDDMECTSGLEVDFDHG
FSLESRSNSNTFIGDVKSLAWGISGDTYNLHEDTSSFREFLFVSGNHGVTVHAFCQPSRS
TLMARTALEGDFGQGRWVEWGTSSIPAQRMEEQEASSLCCKPAGDVIDVNKADGNSEIPH
NLSEGDDDLLRGIGSKTWFQSFFTKAECIKSDGTIWTRFPDKSSFPCSAEVVSFSLFNSN
SPLLDFYFKGNSVSNKESWQETVLASENNTVMKSDLASSVANCKSDVVSDVFSVGVNSSH
KCSRVFSSNSHHLIGFVFTLVDAVSVNPSDESERSKTSNLILVARLENWGIQWVSSLKLE
ESLNIGPVAEWADFHFSDNLLVCLNESGLILFYTAMTGDYVACMNLLQICGLNPQSDLLE
KEELSAGVDVKINNVDGVPEKSTYQHGCFGRRMFKRLFVDSHTSLLAVADEYGVIYVIHA
GDYIPDKYYTSEKLLPHFQQSGLGMLVGWEVGGSDIGPQRGYSSYGNYLKFSNSSMMDGK
FSCLDNIGSNVLQKTRDVNLHGERNQCDSCLSGFSASNTTDQRSRDAEVQSHTLRKILLS
TCRFNEDDCICFSPLGITRFIKRRHLKNQKGPQIIHFDLRAESAVHDDSCLNGNKMFCLQ
GRKEAFIGEAVGCTFQGCFYLVTEGGLSVVFPSISVSSNFIAVETIGYRQSSINTGIGYQ
IKDVLGIDESKQPWPLWKLEVLDRAFLNESPQEADRLCLENGWDLKISRMRRLQIALDYL
KFDGIEQSLEMLVGVNLAEEGILRLLFAAVYLMHCKSSNDNEVSAASRLLALATSFATKM
IRRYGLLQLREDSYPLQSFTRTHVLSFPPVGLEKVQNDQENSRKLREMARFLEIIRNLQY
RLDLRFKRPGQGLVDGMEVSSLMDMDSSQDESIRSTDAVSLEIPNQLEISFPEPSGSNDT
ENLALIPMDTESHLDPEYISEVSALVSKGGMLEKKILPLENPKEMIARWRLDNLDLKAVV
KDALLSGRLPLAVLQLHLCHSRGLVTDKEPIDTFTEIRDIGRAIAYDLFLKGETGLAVAT
LQRLGEDIETSLKQLLIGTVRRSLRAEIAAEMKKCGYLGPHDWKILNRISLIERLYPSSS
FWKTFLGRQKEFMRTSSSSSSPGRLDLHLLNSPLLGKLIIECGEIDGVVLGSWTKVSQSS
SVAEAEEDSVHAGYWAAAAIWSNAWDQRTIDRILLDQSFLMGVHVLWESQVEYHICHNDW
EEVSKLLDLVPASILSHGSLQVSLDGAQLASNVVYNRESSHYGKYLCSLEELDAVCMDIP
NVKIFRFPGNLMCSVWLRLLMEEKLAKKFIFLKEYWEGTAEMVPLLARSGFISNGYRTPF
EDDNIKSSSDLNLSDGDGTSHVDTVRAMHKLVVHHCAQYNLPNLLDLYLDHHKLVLDNDS
LGSLLEAAGDWQWARWLLLSRVKGHEYDASLSNARSIMSRNLVPGSKLSVLELDEIIHTV
DDIAEGGGEMAALATLMYAPAPIQSCLSSGSVNRYGSSSAQCTLENLRPTLQQFPTLCRT
LVAACFGQDTTYNVVGPKAKNALSDYLKWCDNIFFSAGRDTSLLQMLPCWFPKAVRRLIQ
IYVQGPLGWQSLSGLPVGESLLDRDIDFFINADEQAEISAVSWEATIQKHIEEELYNSSP
VESGLGLEHHLHRGRALAAFNHLLEARVKKLKAEGQGSASAHGQSNVQSDVQTLLAPLTQ
NEESLLAFVPPLAIIHFEDSVLVSSCAFLLELCGLSATMLGIDITALRRISSFYRSTEIN
DTFRQLPQTGSAFHAVSHESDMIESLARALADDYLHDNTPSIKPKGTLSSVACKRPSRAL
MLVLQHLEKASLPLMVDGNTCGSWLLSGNGNGTELRSQQKAASQHWNLVTVFCRMHKLPL
STKYLTVLAKDNDWVGFLSEAQVGGYPFDTVLQIASKEFGDPRLRIHILTVLKGMQSKKK
ASSSSYSDTTDKGSETPFSDDSICVPVELFRTLAECEKQKNPGEALLMKAKDLSWSILAM
IASCFPDVSPVYCLTVWLEITAARETSSIKVNDIASQIADHVGAAVEATNSLPGSGRALT
FHYNRCNPKRRRLMEPNAADPVSEATIDISNTSTSAKIFVMQGIISEEEKKMELGEHIIV
SSDFDEGHVSLSKMVAVLCEQHLFLPLLRAFDMFLPSCSLLPFIRALQAFSQMRLSEASA
HLGSFSARIKEESVNLLANMGKEGQIGTSWISSTAIKAANAMLSTCPSPYEKRCLLQLLS
ATDFGDGGSAATHYRRLYWKINLAEPSLRKDDVLHLGNETLDDASLLTALEKNGHWEQAR
NWAKQLEASGGSWKSAVHHVTETQAESMVAEWKEFLWDVPEERVALWGHCQTLFIRYSFP
ALQAGLFFLKHAEAVEKDLPAKELHDLLLLSLQWLSGMITMSNPVYPSNLLREIETKVWL
LTVESEAQVKNEGDFNLTCSNRESVVKSSSSIIDRTASLITKMDNHINTMRTRTVEKSDA
RENNQTLHKYQVLDASFPTTAGGSTKTKRRAKGFVPLRRPLADSVDKSTDPDDGFGPLKF
ASEWPLQEENIKMEMSFSRWEERVGPAELERAVLSLLEFGQITAAKQLQHKLSPAQIPSE
FVLVDAFLKLAAISTPSSEISMSMLDEEVRSVIKSYDIPTDQHKVNTLQVLEILETIFTE
GSGRGLCKRIIAVVKAANVLGLSFSEAFDKQPIELLQLLSLKAQESFEEAKLLVQAHSMP
ASSIAQILAESFLKGLLAAHRGGYMDSQKEEGPAPLLWRFSDFLKWAELCPSEPEIGHAL
MRLVITGQEIPHACEVELLILSHHFYKSSACLDGVDVLVALAATRVEAYVSEGDFSCLAR
LITGVGNFHALNFILGILIENGQLDLLLQKYSAAAETNPGTAEAVRGFRMAVLTSLKQFN
PNDLDAFAMVYNHFDMKHETAALLESRAEQSYEHWIHHYDKEQNEDLLDSMRYYIEAAEV
HYSIDAGNKTRQACAQASLLSLQIRMPDFQWLYRSETNARRALVEQSRFQEALIVAEAYD
LNQPSEWALVLWNQMLKPELLEDFVAEFVAVLPLQPSMLVDLARFYRAEVAARGDQSQFS
VWLTGGGLPAEWFKYLARSFRCLLKRTRDLRLRLQLSNVATGFKDVIDACTKALDRVPDN
AGPLVLRRGHGGAYLPLM
NT seq
9777 nt
NT seq
+upstream
nt +downstream
nt
atgagagaagctttaaagatttctatcagcatgggttcgccttcaggcggtgagggtcct
gccatactgcagttgaacaaatggtgcccttcacaggcccagctcaacctgtcagaattt
cgggaagcttttatttctcctactcggcacatattgttattactttcttatcaacgcgaa
gctctgttgcttcctctgattactggggactctacacataataatgatttggaaagtagt
tatgccgaaagttccaaatatccaggatcatttttgaaaggatccacagtatctagtaag
tcagattcaagggatgacatggaatgtacatctgggttagaagtggattttgatcacggt
ttttctcttgaatcaagatctaatagtaatacttttattggtgacgtaaaatcacttgct
tggggtatatccggtgatacttataatctgcacgaggatacctcttcatttagagaattt
ctgtttgtatctggcaaccatggtgtgactgtccatgctttctgtcaacccagtagaagc
actttaatggctaggaccgcactagagggcgactttgggcaagggaggtgggtggaatgg
gggacttcttccataccagctcaaaggatggaggaacaagaagcttccagcttgtgttgt
aaacctgctggagatgtcatagatgtaaacaaggccgatggaaatagtgagattcctcat
aatctttctgaaggagatgatgatttgttgagaggcattggttctaaaacatggttccaa
tcttttttcactaaagccgaatgtattaaatctgatggcacaatatggaccaggttcccg
gacaagtcatcatttccttgttctgctgaggtcgtttcattcagtctttttaacagtaac
tcaccacttctggacttctatttcaaaggcaactctgtatcaaataaggagagctggcag
gaaacagttcttgcttcagagaataatacagttatgaagtcagatttggcttcatctgtt
gcaaattgcaagtctgatgttgtatctgatgttttcagtgttggagtgaatagttcacac
aagtgctccagagtgttctctagcaattcacatcacttaattggatttgttttcacattg
gtggatgctgtttctgtcaatcctagtgatgaaagtgaaaggagcaagaccagtaattta
attcttgttgctaggttagagaattggggaatccagtgggtttcctcattgaagcttgaa
gaaagtctaaacataggcccggtggctgagtgggcagacttccacttttctgataatctt
cttgtttgtcttaatgagtctggcttaatccttttttatactgctatgactggtgattat
gttgcatgtatgaatcttttacaaatatgcgggcttaacccccaatctgatttacttgag
aaagaagaactttctgcaggcgttgatgtgaaaattaacaatgttgatggagttcctgag
aagtcaacttatcaacatggttgttttggtagaagaatgtttaaaaggttgtttgtcgat
tcacatacttccctcttagctgtggctgatgaatatggtgtaatatacgtaatacatgct
ggtgactatattccagacaagtattatacatctgagaaattgcttcctcattttcagcaa
tcaggacttggcatgttggttggttgggaggttggtggttctgatattggaccccaaagg
gggtattctagttatggtaattatctcaaatttagtaattcatccatgatggacggaaaa
ttctcttgcttggataatattggaagcaatgtacttcagaaaacccgagacgtgaacctt
catggagagaggaaccaatgtgactcatgtttaagtggcttttctgcttcaaatactaca
gatcagaggtctcgtgatgctgaagtgcaatcacacactttgcgaaaaatattgctttcc
acgtgtagatttaatgaggatgactgtatctgtttttctcctttgggaattactcggttt
attaaaagacgtcatttgaagaatcaaaagggtcctcagatcattcatttcgatctgcgt
gcggagtctgcagttcatgatgacagctgcttgaatgggaataaaatgttttgtctacaa
gggagaaaagaagcttttattggagaagcagtcggttgcacattccagggatgtttttat
ctggtgacggaagggggtctttcagtggtttttccctctatatcagtttcatctaatttc
attgctgttgagaccattggatatcggcagtcaagtataaatacaggcattggatatcaa
atcaaagatgtattgggaattgatgaatcaaaacagccctggccattgtggaagcttgaa
gttttggatagagcttttctgaatgaaagccctcaagaggcagatcgcttatgtttggaa
aatgggtgggacctgaaaatatcacggatgcgtcgattgcaaatagctctggactacttg
aaatttgatggaatagagcaatctctagaaatgcttgtgggtgtaaatcttgccgaagaa
ggaattttaagattgctctttgctgctgtttatctgatgcactgtaaatcttccaatgat
aatgaggtttctgctgcatcaaggcttctcgcattggccacaagctttgcaaccaaaatg
attcggagatatggattgctacaacttagggaagattcttacccattacagagttttact
aggactcacgtactttcttttccaccagttggactggagaaagtacaaaatgatcaggag
aattcaagaaaacttcgagagatggctcgctttttagagattattcgaaatctgcaatat
cgacttgatttaagattcaaaaggccaggccaaggattggtggatggtatggaagtatct
agtttgatggatatggattcatcccaagatgaatctattcgatccacagatgcagtatca
ttagaaattccaaaccaacttgaaatatcttttcctgagccttcaggctccaatgatact
gaaaatcttgctttgatacctatggatactgaatcccatttggaccctgagtacataagt
gaagtatctgctcttgtgtctaaaggggggatgctggagaagaaaattcttccattagaa
aatcccaaggagatgattgcacgttggaggttagataatttggatcttaaagctgtggtt
aaagatgctctactctccggtcgtctccctttagcagttctgcaactgcatctttgtcat
tcaagaggtttggtcactgacaaagagcctattgatactttcactgaaattcgcgacatt
ggaagagccattgcctatgatctatttttgaagggtgaaactggccttgctgtagctaca
ctgcaaaggcttggagaggacattgaaaccagcctcaagcagttattgattggcactgta
aggagatctcttcgagcagaaattgctgcggagatgaaaaaatgtggttacttgggacca
catgactggaagatactaaataggatatcactcattgagaggctctaccctagtagtagt
ttctggaaaacatttcttggccggcagaaagaattcatgagaacttcatcaagttcaagt
tcaccagggagactggatttgcacctgctgaattcacctttgttaggcaagctgataatt
gagtgcggtgagattgatggggttgttttaggttcatggacaaaagtcagtcagagctct
tctgttgctgaggcggaagaagatagtgttcatgctggatactgggctgctgctgctatc
tggtctaatgcctgggatcaaagaaccattgatcgaatactgctggatcaatcttttctt
atgggtgttcatgtattgtgggaatctcaagttgagtaccatatatgccataatgactgg
gaagaagtttctaaactcctggacttggttcctgcatctattttatcgcatggaagcctc
caagtcagtttagatggtgcacagcttgcttcaaatgttgtgtacaatagggaatcttct
cattatggcaaatacttatgctctcttgaagaactagatgctgtgtgcatggacattcca
aacgtcaaaattttcaggtttccaggtaatcttatgtgctcagtctggttaaggttgctt
atggaggagaaacttgcaaagaaattcatttttcttaaggaatattgggaaggcacagca
gagatggtacctcttctggcccgttcaggcttcatctctaatggatatagaactcctttt
gaggatgataacattaagagttcatcagatctcaacttgtcagatggtgatggaacctct
catgttgacactgtgcgagctatgcataaattggtagtacatcactgtgctcaatacaac
ttgccaaacctgctggacctttatcttgaccaccacaaactggttttagataacgattcg
cttggttcattgctggaagctgcaggagattggcaatgggcaagatggttgctcttatct
agagtaaaggggcatgaatatgatgcctcactttctaatgctcgttcgataatgtcacgt
aatttagttcctggcagtaaactcagtgtcctggagttagatgaaataattcatactgtt
gatgacatcgcggaaggagggggggaaatggcagctctagcaacgctaatgtatgctccc
gcaccaattcaaagttgcctgagttctggtagtgtaaaccggtatggtagctcctctgcc
cagtgcaccctggagaatcttagacctacccttcagcagtttcctacattgtgccgcaca
ctggtagctgcatgttttggacaagatacaacttacaatgttgtgggccctaaagcaaag
aatgctttgtctgactatttaaaatggtgtgataacatcttcttctctgctggacgcgat
acttcgcttctgcaaatgctgccgtgctggtttcctaaggctgtgcgaagattgattcag
atttatgtccagggtcctcttggatggcagtcactttcaggtctgcctgttggagaatct
ctactagatagagacattgattttttcataaatgctgatgaacaagctgagatcagtgca
gtctcctgggaagcaactatccaaaagcacattgaagaggagctctataactcttcaccg
gtggaatctggacttgggcttgagcatcacttgcatcgtggacgtgcactggcagctttc
aaccatcttcttgaagctagagttaaaaaattgaaagcagaagggcaaggcagtgcttca
gcacatggacaaagtaatgtgcaatcagatgtgcagacacttcttgcacctttaacccaa
aatgaagagtctcttcttgcattcgttccaccccttgctattatccattttgaggattca
gttttggtgtcttcatgtgcttttctcctggagctttgtgggctatctgccaccatgctt
ggcattgacattactgccttgagacggatatcttccttttacaggtccacagaaatcaat
gacacttttagacaacttccacagacgggttctgcatttcatgcagtatctcatgaaagt
gatatgatagagtctcttgcacgagctcttgccgatgattatttgcacgataatacaccc
agtatcaaacccaagggaactctaagttcagttgcttgtaaaagaccttcacgagctctc
atgctcgtccttcagcatttggaaaaggctagtcttccactgatggtggatggaaataca
tgtgggtcttggctattaagtggcaatggtaacggaactgaattaagatctcaacagaaa
gctgcaagccagcattggaatttagttacagttttttgtcggatgcataagcttcccttg
agcacaaaataccttactgtacttgcaaaagacaatgactgggttgggtttttgtcagaa
gctcaggttggaggatacccttttgacacagtactacaaatagcatcaaaggagtttggt
gatccacgtctcagaattcatatattaacagttttgaaaggcatgcaatcaaaaaaaaaa
gctagctcttcatcatattcagatactacagataaaggaagtgaaactcccttttcagac
gacagcatatgtgttcctgtcgaactcttcagaaccttagctgagtgtgagaagcagaaa
aatcctggagaggcccttttgatgaaagcaaaggacttgtcttggtctattttggccatg
attgcatcttgctttcctgatgtgtctccagtgtactgcttaacagtttggctagaaatt
actgcagcaagggaaacttcatccattaaggtgaatgatattgcatctcagattgcagat
catgttggagcagctgtggaagctactaattctctaccaggaagtggtagagcccttaca
tttcactacaaccggtgtaatccaaaacgcaggcggcttatggagcccaatgctgctgat
cctgtgtctgaggcaacaattgacatttcaaatacttccacgagtgcaaaaatatttgtc
atgcaaggcattatttctgaggaagagaaaaaaatggaacttggtgaacatattattgtt
tcaagtgattttgatgaagggcatgtttctctttccaagatggttgcagtgctatgtgaa
caacacttgttcttgcctctgctaagggcatttgacatgttccttccttcatgttcatta
ttacctttcatccgtgctcttcaggcattttcgcaaatgcgtctttctgaagcctcagca
catttgggttctttttctgcccgaattaaggaagaatctgtgaatctactggcaaatatg
ggaaaagaagggcagattgggacttcttggataagctccactgctataaaagctgccaat
gctatgctttcgacttgtccatctccttatgagaagagatgcttactacaacttctttct
gctactgacttcggtgatggaggatctgcggcaacacactatcgacgactttattggaaa
attaatttagcagagccatcattacggaaagatgatgttttacaccttgggaatgagact
ctagatgacgcttcgcttttaacagcactagaaaagaatgggcattgggagcaagcacgg
aactgggccaagcagttagaggccagtggtggatcttggaaatctgctgttcatcatgtt
acggagactcaggctgaatctatggtagctgagtggaaggaatttctttgggatgtccca
gaagagagagttgcattatggggccactgccagacgctgttcataagatattccttccct
gctttacaggctggattatttttcctaaaacatgcagaagctgtggagaaagatctccct
gcgaaggagcttcatgatctattgttgctttctctacaatggttgagtgggatgataacc
atgtctaatccagtttatccttcgaatcttctgcgggaaattgagactaaagtttggctc
ttgacagtagaatcagaagctcaggtgaagaatgaaggagacttcaatttaacctgttca
aatcgggagtctgttgtcaagagtagctctagtattattgaccgaactgcaagtttaata
actaaaatggacaatcatataaacacgatgaggaccagaactgtagagaaaagtgatgct
agagagaataatcagacacttcacaagtaccaagtcttggatgccagctttccaaccaca
gctggggggagtacaaagacaaagcggagagccaaaggctttgtgccactaagacggcca
ttagcagattctgtggataaaagcaccgatcctgatgatggctttggtcctcttaaattc
gcaagtgaatggccattgcaagaagaaaatattaaaatggaaatgtcattttcgaggtgg
gaggaaagggttggacctgcagagctggagagagctgttctttctttattggagtttggt
caaataacagctgccaagcaactccaacataagctgtctcctgcacaaataccttctgaa
tttgtgcttgtggatgcttttttaaagcttgcagctatctcaactcctagcagtgaaata
tccatgtcaatgcttgatgaggaagtgcgttctgttatcaagtcatatgatataccgact
gaccagcataaggtcaacactctgcaggttttggagattttggaaaccatttttactgaa
ggtagtggacgtggcctatgcaagaggataatagcagttgtgaaagctgcgaatgtcttg
gggctttcattttcggaggcatttgataagcaaccaatcgaattgctacagctgctttct
cttaaagcacaggagtcatttgaggaggcaaagctccttgtgcaagctcattctatgcca
gcctctagtattgctcaaattcttgcagaatcatttctaaagggcctactggctgcacat
cgtgggggatatatggattctcaaaaggaggaagggcctgctcccctactatggagattt
tcagacttcctgaagtgggcagagctctgtccttcggagccagaaattggccatgcattg
atgcgtttggtgattactggacaagagataccacatgcttgtgaggttgagcttcttatt
ctgtctcaccacttctacaaatcatcagcttgccttgatggagttgatgttcttgtagcc
cttgctgcaaccagggttgaagcttatgtgtccgagggtgatttttcatgtttggctcgc
ctgataactggagttggaaatttccatgcccttaatttcattcttggaattcttatagaa
aatggtcagctggatcttcttcttcaaaaatattcagctgctgcagagacaaacccaggc
actgctgaggctgtcaggggatttcgaatggctgtcctgacatcgttgaaacagtttaac
cccaatgaccttgatgcatttgcaatggtctacaaccattttgacatgaagcatgaaaca
gctgctctattagagtcacgagcagagcagtcttatgagcactggatccatcactatgac
aaggagcagaatgaagatctgttagattccatgcgctattacatagaagctgctgaggtt
cattattccatcgatgctggcaacaaaacacgccaagcttgtgctcaggcttcccttctg
tcccttcaaatccgaatgccagatttccagtggctttatagatctgaaaccaatgccaga
cgagccctagtcgagcagtcccgttttcaagaggccctaatagttgctgaagcctatgat
cttaaccagccaagtgagtgggcattggttctttggaatcagatgctcaaaccagaacta
ttagaagattttgtggctgagtttgtggctgtgcttcctctccagccttcaatgcttgtt
gatcttgcaagattttacagggctgaggttgccgccagaggggaccagtcccaattctca
gtttggctaactggtggaggtttgcctgcagaatggtttaaatacttggctagatcattt
agatgcttgttaaagcgaacgagggatttgaggctgcggttgcagctgtctaatgtggca
actggatttaaggatgtgattgatgcctgcacgaaggcattggacagagtccctgacaat
gccgggccacttgtgctgaggagagggcatggtggggcttacctcccactaatgtga
DBGET
integrated database retrieval system
