Carya illinoinensis (pecan): 122303572
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Entry
122303572 CDS
T08745
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03013
Nucleocytoplasmic transport
cill03015
mRNA surveillance pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122303572
09122 Translation
03013 Nucleocytoplasmic transport
122303572
03015 mRNA surveillance pathway
122303572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122303572
03041 Spliceosome [BR:
cill03041
]
122303572
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122303572
Spliceosome [BR:
cill03041
]
Complex C
Other components
EJC/TREX
122303572
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
122303572
NCBI-ProteinID:
XP_042971328
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Position
3:complement(17849457..17856246)
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AA seq
866 aa
AA seq
DB search
MSSQYPILGNRPIDQWKVTELKEELKRRKLTIKGLKDDLIRRLDEAIRIEMESAGNDVDN
VLNSGTQPLVGARDVQSVPVAAETAKYLADHGGKKNKEPDKVVVQVDINDSVAALDQEKV
EEAGFSGTDSGRVEEKLVVHTTAIETSAKVSEIVVSEVALSGQDLEKFETEKESRNSKPQ
LDNEGSTPQLGNEGSTPQLGNEGSTPQLGNEGYEGSTPLLGNEGSTPLLGNEGSTPQLGN
EGYEGSTPLPGNEGSTPLLGNEGSTPQLGNEGYEGSTPLRGNEGYEGSTPLLGNEGSTPL
LGNEGSTPQLGNEGYEGSTPLRGNEGSTPLHGIESLKTPESVKLDCSTPDNQVSEVSPIF
GSQVKSDSISTDSVSINEKNELKDNVITDHVKLELDVVKPEMVVPSFSNVVPVGGESHPM
DVEGPLENKTSDAEKDDNNATDADISKKIDGTDVGYSEKLNLDRSSGDDSMEEDVLEGKQ
IDWKYNSEEVNKSGVPIVKEESHAAVLGDSLSGEKRDVQVENESHRAATVEKRKLDDVHT
DQAAANNEPIKRQRRWNSEGLKVPEPQSTNSTPNTTPKDAFQTTPKDTFQTTPKDNFQST
GLKRNLSRSDSTNSDSTPKERVVPPSQKAPSNSLRIDRFLRPFTLKAVQELLGKTGTVTN
FWMDHIKTHCYVTYSSVEEAIETRNAVYNLQWPPNGGRLLVAEFVDTQEVKMRLEAPQTP
AAPASSGPTVPLAPPTSQPQPSPRQHNRQQLPPPPPLPPPPPLSNSPESRERAHLPPPPP
LPEKIDPPIVTLDDLFRKTKSTPRIYYLPLSEDQVAAKLASQGKNTKQSAGVACRKEMYR
ASRSIQLVDGFGFLREECFDLRLSYI
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcacagtatcccattcttggcaatcggccaattgatcagtggaaggttacagag
ctaaaagaggaacttaagagaaggaaattgacaatcaaggggctgaaggatgatttgatc
agacgtttggatgaagctatccgtattgaaatggaaagtgctggaaatgatgtggataat
gttcttaatagtggaacccaacctttagttggtgcaagagatgtgcagtcggtgcctgtt
gctgcagaaacagctaaataccttgctgatcatggtggtaaaaagaacaaggagccagat
aaggttgtggttcaagttgacattaatgacagtgtagcagccttggatcaagaaaaagtt
gaggaagctggcttcagtggtactgattctggcagggtggaagagaagctggttgttcac
acaactgccattgaaaccagcgctaaagtatctgagattgtggtatctgaggtagcgttg
agtgggcaggatttggagaaatttgaaactgagaaggagagtagaaactcaaagccccaa
ctggataatgagggttcaacgccccagcttggaaatgagggttcaacgccccagcttggg
aatgaggggtcaacgccccagcttgggaatgagggttatgagggttcaacgcccctgctt
gggaatgagggttcaacgcccctgcttgggaatgaggggtcaacgccccagcttgggaat
gagggttatgagggttcaacgcccctgcctgggaatgagggttcaacacccctgcttggg
aatgaggggtcaacgccccagcttgggaatgagggttatgagggttcaacgcccctgcgt
gggaatgagggttatgagggttcaacgcccctgcttgggaatgagggttcaacgcccctg
cttgggaatgaggggtcaacgccccagcttgggaatgagggttatgagggttcaacgccc
ctgcgtgggaatgagggttcaacgcccctgcatgggattgagagtttaaagactcctgag
agtgtcaagctcgactgttctaccccggacaaccaggtatctgaggtcagccctattttt
gggtctcaagtaaaatctgattctatttctactgattctgtgtcaattaatgaaaagaat
gaactaaaggataatgtaattactgatcatgtcaaattagaactagatgttgttaagcct
gagatggtggtaccatcattcagcaatgttgtcccagttggcggtgaatcacatccaatg
gatgttgaagggccacttgagaacaagacatctgatgcagagaaagatgacaacaatgct
acagatgcagacataagcaagaaaattgatggtacggatgtagggtactcggaaaaattg
aatttagaccgaagttctggtgatgattccatggaagaggatgtgctggagggtaagcaa
attgattggaagtataattctgaagaagtcaacaaaagtggagtacctattgtgaaggag
gaaagtcatgctgctgttcttggggattctttatctggtgagaaaagggatgtccaagtt
gagaatgagagtcatcgagctgcaactgttgagaaaagaaaacttgatgatgtccataca
gatcaagcagcagcaaataatgagccaatcaagaggcaacgtaggtggaactctgaaggc
ctcaaagttccagagcctcagagtacaaattctacgcctaacactactcccaaggatgct
ttccagacaactcccaaggacactttccagactacccccaaggacaatttccagtctact
ggtttgaaacgtaatctctctagatcagactctacaaatagtgatagtacaccaaaggaa
cgtgttgttccaccatcgcaaaaagctccatctaattcacttagaattgatcgatttctg
cggcccttcaccttgaaagcagtgcaagaacttctgggcaaaactgggactgttactaat
ttctggatggaccacatcaagacccattgctatgttacttactcatcagtagaagaagcc
atagagacaagaaatgctgtgtataacctgcaatggcctccaaatggtgggcgtctctta
gtggctgagtttgtcgatactcaggaagtgaaaatgcggttggaggcacctcaaactcca
gctgctcctgccagttctggtcctactgttcctctagcccctcccacctcgcagccgcag
ccctcgccccgtcagcataataggcagcagcttccacccccacctcctctcccacctcca
ccacctttgtcgaactcaccggagtcacgagagcgggctcatcttccacccccacctcca
cttccagagaaaattgatccacctattgtcactttggatgatctctttcggaaaaccaaa
tcaacgcctcggatctactatttaccattgtcagaagatcaagttgcagcaaaacttgca
tcccagggcaaaaacaccaagcagtctgcaggtgttgcttgtcggaaggaaatgtaccgg
gcaagcagaagcatccagttggtagatgggtttgggtttttgcgagaggagtgctttgat
ttgaggttaagttatatctag
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