Carya illinoinensis (pecan): 122303666
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Entry
122303666 CDS
T08745
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122303666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122303666
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122303666
Spliceosome [BR:
cill03041
]
Complex C
Other components
Step II factors
122303666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
RRM_DEAH11
KH_DEAH11
KH_DEAH11_1st
Helicase_C
OB_NTP_bind
DEAD
IBR
AAA_22
AAA_19
IBR_1
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
zf-RING_2
KH_Vigilin
ResIII
HA2_N
Helicase_RecD
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
122303666
NCBI-ProteinID:
XP_042971473
LinkDB
All DBs
Position
3:19623511..19633282
Genome browser
AA seq
1747 aa
AA seq
DB search
MKNTHPSDSTFRRTPPPHATHVFNSPLNSRPARSPYPHRLPNFPANRRLDRPPERTAPPS
RPNFILQLRSNRRGPQNPNIESVIAQCKPSPDNSRVFQSSSVAGALYFSQWTNVLEALVN
LWVSRFDGAHGFEPMVVSNISVPSDRAELRDRLQTLFTDRVRGLMDGEEVNKWRKKLQCT
SDDMRKVTAMLRRPNPFLRRDHLCNKQEGLIAERDLIARRLREFESAMYCILSHLEGKRN
ALEEISDEGVELFMFSEVIDWNQVYSLISRECRRLEDGLPIYAYRKEILQHIHVQQIMVL
IGETGSGKSTQLVQFLADSGLAGDKSIICTQPRKIAAVSLANRVREESIGCYKNKSIIFY
PTSSVIRAFDSDIVYMTDHCLLQHYMNDNNLSGISCIIVDEAHERSLNTDLLLALIKSLL
CRRIDIRLVIMSATADANQLSEYFFKCGIFHVVGRNFPVDVRYVPCVMEGISVSGFVASY
VFDVVRMATEVHINEKDGTILAFLTSQMEVEWACGKFNAPSAVALALHGKLSSEEQFRVF
EDLPGKRKVIFATNVAETALTIPGVKYIIDSGMVKDSKFEPGSGMNVLRVCRISQSSANQ
RAGRAGRTEPGRCYRLYSASDYESMPLNQEPEIRRVHLGVAVLRILALGVQNVQDFDFVD
APSTRAIELAIRNLFQLGAITRRSNGALQLTNDGRSLVKLGIEPRLGKLILGCIDHRLCR
EGVVLAAVMANASSIFCRIGNDEDKLKSDCLKVQFCHHNGDLFTLLSVYKEWEAVPQDRK
SKWCFENSINAKSMRRCQDTIKEIESCLQRDLHVITPSYWMWDPHMSTEHDKNMKKVILS
SLQENVAMYSGYDQLGYQVALTGHHVQLHPSSSLLIFSQKPSWVVFGEILSISNEYLVCV
TAVDIESLSTLYPPPLFDMSMMESRRLQVRVLTGFGSTLLKRFCGKSNSNLHDLELCMRT
ECMDDRIGIEVNIDLNELRVFATSEGMEKAFSFVNGALEYERKLLLSECMEKGLYHGPGV
LPPIALFGAGAEIKHLELEKRCLTVDVYHSNIDAIADKELIMFLEKFASSSICAIHKFTG
IGLDNCDKEKWGRVTFLTPGAAAKAAELNGVEVNGSLVRVVPSQTSLGGDHKMFSFPAVK
AKVYWPRRPSKGIAIVKGEEHDVQFMVNDFYNLLIGGKRVRCQPSNKSMDSVMINGIDKE
LSDAEILEILRSATNRRILNFFQVRGDAIENPPSSACEEALLKEISPFMPKRNPHSNCCQ
VQVVPPEPKDTFIKAFITFDGRLHLEAAKALEQLEGKVLPGCLSWQKIKCQQSFHSSLSC
PAPVYSVINKQLESLLASFRHLTGAECTLDKTASGSYRVKISANATKVVAELRRPVEELM
RGKTIDDASLTPTVVQHLFSRDGINLKKSVQQETGTFILLDRHSLKVRVFGSPDKVALAQ
KKLVESLLALHESKQLEIRLRGRDLPPNLMKEVVRKFGPDLHGLKGMVPGAAFTLNTRRH
VISVHGSKELKQKVEEIIYEIAQMRYDLAERFDNDTACPICLCEVEDGYRLEGCGHLFCR
LCLVEQCESASKNQDSFPIRCARQGCRVPILVTDLRSLLSSEKLEELFRASVGAFVALSG
GTYRFCPSPDCPSVYRVADPGTAGEPFFCGACYAETCTSCCLEYHPYLSCERYQEFKEDP
DSSLREWCRGKEDVKSCPVCGYTIEKFEGCNHVLCRCGRHICWACLEVFGTGEDCYDHLR
NVHGAII
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatactcacccttccgattccaccttccggcgaaccccaccgcctcacgccaca
catgtttttaactcgccgctcaattcccggcccgcgcggtccccgtacccgcaccgcctc
cccaattttcccgcgaacagacgtcttgaccgtcctccggagcgaaccgcacctccttcc
cgccccaacttcatcctccagctacgctccaaccggagaggtcctcaaaacccgaatatc
gagtccgtgatcgcacaatgcaagccttcgccggataattccagggtctttcaatccagt
tccgtcgcaggagccttgtatttctctcaatggaccaatgttctagaagcgctggtcaat
ctctgggtctcgcgtttcgacggcgcccacggtttcgagccgatggttgtaagtaacatc
tcggtcccttccgatcgcgctgagcttcgggaccggctccaaaccctattcacggaccgc
gtgcgcggtcttatggacggggaagaagtgaataaatggcgtaagaagctccagtgcacg
tcggacgatatgagaaaagtcacggctatgctgcgtaggccgaacccattcctcaggcgg
gaccacctctgtaataagcaggaggggctaattgccgagagggacttgattgcgagacgg
ttgagggagttcgagtctgcaatgtactgtatactgtctcatttggaaggaaagaggaat
gctctggaggagattagcgacgagggcgtggaactgtttatgttcagtgaggttatcgat
tggaatcaggtttacagcttgatatcgcgggagtgtcgacggcttgaggatgggttgccg
atttatgcttacaggaaggagattcttcagcacattcatgtccaacagataatggtgtta
attggagagactggctccgggaagagtacacagttagttcaatttcttgcagactcagga
cttgctggtgataagtccattatatgtactcagcctcgcaagattgctgccgtctcattg
gcaaatagggtcagagaagaaagcattgggtgttataaaaacaagtcaatcattttctat
ccaacatcttcagtcattcgggcatttgattccgacatagtatatatgacggaccactgc
ttactgcagcattacatgaatgacaataatttatctgggatatcatgtatcatagttgat
gaggctcatgagaggagcttgaatactgatctcctcctggcattgatcaagagtttattg
tgtcgaagaattgatatacggcttgttataatgtctgctactgcagatgcaaaccagctc
tcagagtactttttcaaatgtggaatttttcatgtggtgggaagaaactttccagttgat
gtcagatatgtcccttgtgtgatggaaggaatttctgtttctggttttgttgcttcatat
gtgtttgacgtcgtgaggatggcaactgaagttcacataaatgagaaagatggaacgatt
cttgcatttctaacttctcagatggaagtagaatgggcttgtggaaagttcaatgctccc
tctgcagttgcattagctttacatgggaaactttcttctgaagaacaatttcgtgttttc
gaagacctccctggaaaaagaaaagtgatatttgctacaaatgttgcagagacagctctg
acaattcctggggtcaagtatataattgattctgggatggttaaagacagtaaatttgaa
cctggcagtggcatgaatgtcctcagggtttgcaggatcagccagagttctgctaatcaa
cgagctgggcgtgctgggagaaccgaacctggaaggtgttatagactctactcagcatct
gattatgaatctatgcctcttaaccaggaacccgagattcgaagagttcaccttggagtt
gcagttcttaggatccttgctttaggcgtccagaatgtacaggactttgactttgttgat
gctccaagcactagagctattgaattagccatcagaaatctttttcagttaggagctatt
acacggaggagtaatggtgctctgcaattaaccaacgatggtaggtctttggttaaattg
ggtattgagcctcggcttggtaagctgatccttggctgcattgatcatcgtttgtgtcgg
gagggagttgttcttgctgctgtaatggctaatgccagtagcatattttgtagaattggt
aatgatgaagataaactcaaatctgattgccttaaggtgcaattttgtcatcacaatggt
gacctctttactcttctatctgtttacaaagaatgggaggctgtgcctcaagataggaaa
agcaagtggtgttttgaaaacagcatcaatgccaaatccatgcgtagatgtcaagataca
atcaaggaaatagaatcttgtcttcaacgtgatcttcatgttattactcccagttactgg
atgtgggatcctcatatgtctactgagcatgataaaaatatgaaaaaggtgatactctct
tcccttcaagaaaatgtagccatgtactctgggtatgatcaacttggttatcaagttgcc
cttactggacatcatgtccagctgcatccttcaagttctttactaatattcagtcagaag
cctagctgggtagtttttggggaaatcttatcaatttctaatgaatatctagtttgtgta
actgctgttgacattgagtctttgtctactctctaccctccccctctgtttgacatgtct
atgatggaaagccggaggttgcaggtgagggtgttgaccggatttggtagtactcttctg
aaaagattttgtgggaagtccaacagtaatctgcatgatcttgaattgtgtatgcgaaca
gagtgcatggatgatcgtattggcattgaagtcaatattgacctgaatgagcttcgggta
tttgccacttcagaaggtatggaaaaggcttttagttttgtcaatggcgcgttggagtat
gaacggaagttgttgcttagtgaatgcatggagaaaggcttataccatggacctggtgtc
ttgcctcctattgcactgtttggagctggtgcagagatcaagcatttggagcttgaaaag
agatgtttgactgtcgatgtgtatcattcaaatatagacgcaattgctgataaggagctt
ataatgtttcttgagaagtttgcctctagtagtatctgcgctatccacaagttcacaggc
attggactggataattgtgacaaagagaagtggggcagggtaacatttcttactcctggt
gctgctgcaaaggctgctgaactaaatggagttgaagtcaatggctctttggtaagggta
gttccttcacagacatcattgggaggggatcataaaatgttttcatttcctgcagttaag
gctaaagtatattggccacgtaggcccagtaaggggattgcaattgtaaaaggtgaagaa
catgatgttcagttcatggttaatgatttctataacctgctgataggaggaaagcgtgtt
cgttgtcaacctagcaacaagtctatggatagtgtcatgataaacggaattgataaagag
ctttcagatgctgaaattcttgaaatattgaggtctgctacaaataggagaatccttaat
ttcttccaggtgagaggagatgctatagaaaatccaccaagcagtgcttgtgaggaggcg
cttctaaaagaaatctctccatttatgcctaaaaggaaccctcactctaattgttgccaa
gtccaggttgtcccacctgaaccaaaggatactttcattaaagcttttatcacttttgat
ggaagattgcatcttgaggcagcaaaagctttggagcaactggaagggaaagtattgcct
ggttgtctttcatggcagaagataaagtgccagcagtcatttcatagctccttgtcatgc
cctgcgcctgtctattctgtgatcaataagcaattggaatctttacttgcaagcttcagg
catttaacaggtgcagagtgcactctagacaagactgctagtggttcctatcgagtgaag
atatctgctaatgctacaaaagttgtggcagaactcagaagacctgtggaagagcttatg
agggggaagactatagatgatgccagcctcaccccaaccgttgtacagcatctattttcc
agagatggcatcaatcttaagaagtcggtgcaacaagagacaggaaccttcattcttctt
gacaggcatagccttaaggtacgggtgtttggttccccagacaaggttgcgttggcacag
aagaaattggttgaatcccttttggcccttcatgaaagcaagcaacttgagatccgtctc
cgtggtcgagatctgcctcccaaccttatgaaggaggtagtgcgaaagtttgggccagac
ctccatgggctcaaagggatggtacctggggctgcatttactctcaatactcgtcgacat
gtcatctctgttcatggtagcaaagagttgaagcaaaaagtagaagagattatttatgag
attgcacagatgagatatgatttggctgaaaggtttgacaatgacactgcttgccccatt
tgcctgtgtgaggttgaggatggttaccggcttgagggctgtgggcatttgttctgtcgt
ttgtgtcttgtggagcagtgtgagtctgcaagtaagaaccaggatagtttcccaatacgg
tgtgcacgtcagggctgcagggttccaattttggttacggatttgaggtctctcttgtct
agtgagaagttggaggaactcttcagggcatctgttggggcctttgttgcattgagtggg
ggcacttacagattttgcccgtctcctgactgtccttcagtttatcgagtggcagatcct
gggactgccggtgagccatttttctgtggggcatgttatgccgagacttgtacaagttgc
tgcctggagtatcatccatacctgtcgtgtgagaggtatcaggagttcaaggaagatccg
gattcatctctcagggagtggtgcaggggcaaagaagatgtgaagagctgccctgtgtgt
ggctatacaatcgagaaatttgaaggatgcaatcatgttttgtgtagatgtgggaggcac
atatgctgggcatgtttggaggtctttggaaccggtgaggactgctatgaccatttgaga
aatgtacacggcgccatcatatga
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integrated database retrieval system
