Carya illinoinensis (pecan): 122303718
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Entry
122303718 CDS
T08745
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122303718
09123 Folding, sorting and degradation
03018 RNA degradation
122303718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122303718
03041 Spliceosome [BR:
cill03041
]
122303718
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122303718
mRNA degradation factors
5'-3' decay
Lsm complex
122303718
Spliceosome [BR:
cill03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
122303718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
122303718
NCBI-ProteinID:
XP_042971559
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All DBs
Position
3:20424058..20428250
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AA seq
88 aa
AA seq
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MAANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEG
RRITKLDQILLNGNNIAILVPGGSPDPE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggccgctaacaatccttcgcagctgcttccgtcagaactaattgataggtgcattggg
tcaaagatatgggtgataatgaagggggacaaggagctcgttggtactctcaggggcttc
gacgtctacgtcaatatggtcctcgaagacgtcacagagtatgagatcacttctgaaggg
agacggataacaaagcttgatcagattttactaaatggaaacaacattgccattctcgtg
cctggtggttcgcctgatccagaatga
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