KEGG   Carya illinoinensis (pecan): 122303718
Entry
122303718         CDS       T08745                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03018  RNA degradation
cill03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122303718
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122303718
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cill03019]
    122303718
   03041 Spliceosome [BR:cill03041]
    122303718
Messenger RNA biogenesis [BR:cill03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     122303718
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     122303718
Spliceosome [BR:cill03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    122303718
SSDB
Motif
Pfam: LSM DUF7452 Ntox4
Other DBs
NCBI-GeneID: 122303718
NCBI-ProteinID: XP_042971559
LinkDB
Position
3:20424058..20428250
AA seq 88 aa
MAANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEG
RRITKLDQILLNGNNIAILVPGGSPDPE
NT seq 267 nt   +upstreamnt  +downstreamnt
atggccgctaacaatccttcgcagctgcttccgtcagaactaattgataggtgcattggg
tcaaagatatgggtgataatgaagggggacaaggagctcgttggtactctcaggggcttc
gacgtctacgtcaatatggtcctcgaagacgtcacagagtatgagatcacttctgaaggg
agacggataacaaagcttgatcagattttactaaatggaaacaacattgccattctcgtg
cctggtggttcgcctgatccagaatga

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