Carya illinoinensis (pecan): 122304194
Help
Entry
122304194 CDS
T08745
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122304194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122304194
03012 Translation factors [BR:
cill03012
]
122304194
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122304194
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122304194
Translation factors [BR:
cill03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122304194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
R3H
DEAD
HA2_C
HA2_N
Ank_2
AAA_22
nSTAND3
ATPase
AAA_19
Ank_5
ABC_tran
NACHT
AAA_7
AAA_25
Rad17
AAA_23
AAA_16
Motif
Other DBs
NCBI-GeneID:
122304194
NCBI-ProteinID:
XP_042972236
LinkDB
All DBs
Position
3:complement(38851993..38884807)
Genome browser
AA seq
1236 aa
AA seq
DB search
MAKKRQKKGDQNDKTAETKRLIIAEATTIRISQQLQKFHESKDEVYMFEENLSNFERAVV
HALCRKMGMTSKSSGRGSQRRVSVYKTKKKVDTTKGVESLPYLTFSEEAKLVLQDLFIQY
PPDDGKIDYGMVGKQAEKIDKTRQRKDDIFCKPSMSTAEIAKKVELLASKMQKEGYLKQV
AEERTKLPIASFRDVISSTIESHQVVLISGETGCGKTTQVPQFLLDYKWGKGKACKIVCT
QPRRISATSVAERICYERGGNVGDDIGYKIRLESKGGRNSSIVFCTNGVLLRVLISKGAG
RSKSELGTKSAKQDLSDITHIIVDEIHERDRYSDFILAILRDMLPLYPHLHLILMSATLD
AERFSQYFGGCPIIRVPGFTYPVKTFYLEDVLSILKLKERNHLDNTLSSVPIEDTLLTEE
DKLALDEAINLAWSNDEFDLILELLSSEGTSKVLNYQHSLTGFTPLMVFSGKGRVADICM
LLSFGAECHLQAKDGSTALEWAERENQREAAEILKKHMESAVSNSIEEQQLLDKYLRTIK
PELIDVVLIEQLIKKICFDSQDGAILVFLPGWEDINRTREKLISMPFFKNTSKFMIICLH
SMIPSAEQKKVFKRAPHGCRKIVLATNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVST
LQSSWVSKASAKQREGRAGRCQPGICYHLFSKLRAASFPEFQLPEIKRIPIEELCLQVKL
LYPNCKIEDFLQKTLDPPVFETIRNAIIVLQDIGALSVDENLTELGEKLGSLPVHPLTSK
MLFFSILMNCLEPALTLACASDYRDPFTLPMLPTDKKRADAAKSELASLYGGHSDQLAVI
AAFECWKNAKQRGQEAWFCSKYFVSKSTMNMLSGMRKQLQNELIRNGFIVDDISSCSLNA
HDPGILHAVLVAGLYPMVGRLRQPHKSGKRLVETAGGDKVRLHPHSTNFKLSLRKTDECP
LIIYDEITRGDGGMVIRNCTVAAPLPLLLLATEIAVAPAKDDDNDDEDDDEEDSGDEESD
EGGMEIENRSGGQHEEKIMSSPDNSVTVIVDRWLFFGSTALDVAQIYCLRERLSAAVLFK
VTHPRTVLPPVLGASMHAVANILSFDGLSGMSIPLEPVDSLTSMVNAAEINKSAPGKRRM
MVQNSDGYLRSLMGDSMYQKSPSHHPNSGVPKLKGTTNLGDFSSDRVWSPRNSAVQNMYG
TPALRGPISDGNGLGMFHKHGSRGDSLKRQRENESR
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaagagacagaagaaaggagatcaaaatgataaaacggctgaaacgaaaagg
cttatcattgccgaagccacaactattcgcatatcccaacaactgcagaagttccatgaa
tcgaaagatgaagtttacatgtttgaagaaaacctgtcaaactttgaacgtgcagtagtg
catgcattatgcaggaaaatgggtatgacatccaagagttcagggcgtggcagccaacga
cgggtttctgtctacaaaactaaaaagaaagttgacaccacgaagggtgtggagagtcta
ccatatttgacattttcggaagaggcgaaattggttttgcaggatttgtttattcaatac
ccacctgatgatggaaaaattgactatggaatggttgggaagcaagctgaaaagattgat
aaaacaagacaaaggaaagatgatattttctgcaaaccttcaatgagtacagcagaaatt
gcgaagaaagtggagttacttgcttccaaaatgcagaaggaaggatatttgaagcaggtc
gctgaagagaggactaagctcccaattgcatcctttagggatgtcatttcatcaacaatt
gaatctcaccaggtagttctcatatctggtgagactggttgtggaaagaccacacaggtc
ccccaatttcttctagattataagtggggtaagggcaaggcttgtaaaattgtgtgtact
caacctcgacgtatctcagcaacatcagttgctgagagaatctgttatgaaagaggaggg
aatgttggagatgatattggatacaagatacggttggaaagcaaaggtggaaggaactca
tcaattgttttctgcacaaatggggttctgttgagggtgttaatttctaaaggtgctggt
aggtcaaagagtgaacttggaacgaaatctgcaaagcaagatctttctgatataactcac
attattgtggatgaaattcatgaaagggatcgctactctgattttattttggcaattctg
agagacatgcttcctttatatcctcatctgcatttgatactcatgagtgctactcttgat
gctgaacgtttttcgcaatattttggtggctgcccaatcatccgtgtgcctgggttcact
tatcctgttaaaactttttatttggaggatgtactttctattctaaaattgaaggaacgt
aatcatcttgataataccttatcaagtgtccctattgaggacacactgttgacagaggaa
gataagcttgctttagatgaagctattaatctggcttggtcaaatgatgagtttgatctg
atcctagaattgctttcttctgagggaacttcaaaagtgttgaattaccagcattctttg
actggctttacaccattgatggtattttctggaaagggtagagtggctgatatttgcatg
ctcctatcttttggggcagaatgccatttacaggccaaggatggatctactgcattggag
tgggctgaacgggaaaaccaaagagaagccgctgaaatacttaaaaaacacatggaaagt
gccgtttccaactccattgaagaacaacaattacttgataagtatctacgaacaatcaag
cctgaacttattgacgttgttcttatagagcagttgataaaaaaaatatgttttgattca
caagatggagctatccttgttttcctaccagggtgggaggatataaatagaaccagggag
aaattaatttcaatgccatttttcaaaaatacttccaagtttatgataatatgtcttcat
tctatgattccatctgctgagcaaaagaaggtttttaaacgtgctcctcacggttgccgg
aaaattgttcttgcaaccaatattgctgagactgccattaccattgatgatgttgtttat
gttatagacagtggtcgtatgaaggaaaaaagttatgatccttataataatgtatcaact
cttcaatcttcttgggtctcaaaagcaagtgccaaacaaagagaaggacgtgcaggccga
tgtcagccaggaatatgttatcatctcttttcaaagctccgagcagcatcttttccagag
tttcaacttcctgaaattaagagaattccaattgaggaattatgtctgcaggtgaaattg
ttatatccaaattgcaagatagaagatttcttgcagaagacattagatcctccagttttc
gagaccatacgaaatgcaataattgttcttcaagatattggggccttgtcagttgatgag
aatttgactgaacttggggagaagctaggttctctacctgttcatcctttgacgagcaag
atgcttttcttttctatattgatgaactgccttgagccagccttgactctggcatgtgcc
tctgactatagagatccatttactcttcccatgttaccaacagacaagaagagagctgat
gctgctaagtctgagcttgcatcattatatggagggcacagtgatcagctagcagtaata
gctgcatttgagtgctggaagaatgcaaagcaaagaggtcaagaggcatggttctgttcc
aagtactttgtctctaaaagcactatgaatatgttgtctggtatgcgtaagcagctccaa
aatgaactaattcggaatgggtttattgttgatgatatttcaagttgtagcttgaatgca
catgacccaggtatacttcatgcagtccttgtggctggtttgtatcctatggttggaaga
ttgcgtcaacctcataaaagtggaaaacgacttgtggagaccgccggcggtgataaagtt
cgtttgcatcctcattccactaattttaagttatcattaaggaaaactgatgagtgccct
ttgataatatatgatgagataacacgtggagatggaggtatggtcataaggaactgtacc
gtggctgcaccactcccattgttattgcttgcaacagagattgctgtcgctccagcaaaa
gacgatgataatgatgatgaagatgacgatgaagaagatagtggtgatgaagaaagtgat
gaaggtgggatggagatcgagaatcggtcaggtggacaacatgaagagaagatcatgtca
tctcctgataattcagttactgtcattgtggatcggtggcttttttttgggtcaacagca
cttgatgttgctcaaatttactgcttgagagagcgattatcggcagcagtcttattcaag
gtaacacatccaaggacagttcttcctcctgttctaggggcctccatgcatgctgtagcc
aatattctatcttttgatgggctatccgggatgtcaatacctctagaacctgtggactca
ctgacttcaatggtaaatgctgctgagattaacaagtctgccccagggaagaggagaatg
atggtacagaattcagatgggtacctccgatcgcttatgggagacagcatgtaccagaaa
tcaccttcccatcatcccaatagtggagttcctaaattaaagggaacaacaaacttgggt
gatttttcaagtgacagagtttggtcaccccgtaattcggctgtccagaacatgtatggg
acacctgcgttacggggtcccatttctgatgggaatggtttgggaatgtttcacaaacat
ggttcaaggggagattctcttaagcggcagcgtgagaatgagtctagataa
DBGET
integrated database retrieval system
