Carya illinoinensis (pecan): 122304200
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Entry
122304200 CDS
T08745
Name
(RefSeq) protein PAT1 homolog 2-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122304200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122304200
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122304200
mRNA degradation factors
5'-3' decay
Decapping complex
122304200
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
122304200
NCBI-ProteinID:
XP_042972244
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Position
3
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AA seq
804 aa
AA seq
DB search
MERSDGKAFKDFAEDSSGNAVFDASQYEFFGHNAVEGVELGGLEDNRDNGPAFGPADDEY
HLFDREEVVGFGPLPDVDDLAATFAKLNRAVTGPRYPGVIGDRGSGSFSRESSSAAEWTQ
DGDFSNWLDPHMFGTDGVEEEKRWSSQPQPSARIPEYQPLYRTSSYPEQQPVLHRYSSEP
ILVPKSTFTSFPPPGSRSEQGSPHHLNMSFLGGGPQIPFSTPNLSPCSKSNHHLASLSHG
LNYGGNMLPFTSGGLSFNSRPQNHWANHTGILHGDHAGLLNTIVQQWLPHQNGLRSPQIM
AQQQMLQQQRLHHQLPSLAHFAALQSQKYNVHPSSLHKSKFGLTDMRDQRPKSSQRSKHN
MRFSQQGSDTSSQKSETGWVQIRSKYMTSEEIENILKMQHAATHSNDPYIDDYYHQASLA
KRATGSRLKQPFCPSHLREHPSRGRNSTEQHPHLSIDAIGRIPVSSIRRPRPLLEVDPPL
SASGDSSEQKVSEKPLEQEPMLAARITIEDGICLLLDVDDIDRFLQSSPSQDGGAQLRRR
RQILLEGLATSLQLVDPLGKTSHTVGLTSKDDLVFLRLVSLPKGRKLLSRFLQLLFSGSE
LARIVCMAIFRHLRFLFGGLQSDPGAAETTTHLAKTVSSCVKVMDLRSLSACLVAVVCSS
EQPPLRPFGSPAGDGASIILKSVLERATELLTDPHAAAVPNRALWQASFDEFFTLLTKYC
LSKYETIVQSICLQIQPSTDVIGSEAVQAISREMPVELLRASLPHTNELQRKLLLDFGNH
SMPIAGFNASGESSGRINSESVKG
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggagagatccgatggcaaagccttcaaggacttcgctgaagattcctcaggcaatgca
gtctttgatgcatcgcagtatgagttttttggtcataatgctgtggaaggagtggagttg
gggggcttagaagacaatcgagataatggtcctgcatttggacctgctgacgatgagtat
catttgtttgatagagaagaagttgtaggtttcggacctttgcctgacgtggatgatcta
gctgctacttttgcaaagttgaacagagctgtaacaggaccaagatacccgggagttatt
ggtgatagaggatctggatctttttcaagagaaagttcatctgctgctgagtggacacaa
gatggagactttagtaactggttagatccgcatatgtttggcacagatggtgttgaagaa
gagaagaggtggtcatcacaacctcaaccctctgctcgtattccggaataccaacctttg
tacagaacatcctcataccccgagcagcaaccagtgctgcatcgctactctagcgaacca
attctagtacctaaatcaacattcacgtctttccctccacctggaagcagatccgaacaa
ggttcaccacaccaccttaatatgtcttttcttggtggtggtccacagatacccttctct
actccaaacctctctccttgttccaaatctaatcatcacttggctagtttatctcatggt
ttgaattatggtggaaatatgcttccgttcaccagtggtggcctttcttttaatagcagg
ccgcaaaatcactgggccaaccatactggtatactgcatggggatcacgcaggcctttta
aacactattgtgcaacaatggttacctcatcaaaatggtctcaggtccccacaaataatg
gcacaacagcagatgctgcaacagcagagactgcaccatcaattaccctctttggcccat
tttgcggcattacagtcccaaaagtataatgtccatccatcgtccttacataagtcaaag
tttggattgactgatatgagagaccaaagaccaaaatcatcacaaaggagcaaacataat
atgcgtttttctcagcaaggttctgatactagtagccagaaaagtgagactgggtgggtc
caaattaggtccaagtatatgacatctgaagaaatagagaatatacttaaaatgcagcat
gctgctacacatagcaatgacccatacattgatgactattaccatcaagcaagtcttgcc
aaaagagctactggatcgaggttgaaacagcctttctgcccatctcacttgagggagcat
ccttctcgaggccgaaatagtacagaacaacatcctcatctctctattgatgctattggt
aggatacctgtctcttccatacgcagacctcgccccctccttgaagtcgaccctcctctc
tctgcttctggtgatagttctgagcagaaagtctctgagaagcctctggaacaggaaccg
atgcttgctgctagaatcaccattgaggatggaatttgtcttcttcttgatgtcgatgat
attgatcggtttctacaatctagtccatcccaggatggtggggctcagctcaggcgaagg
cgacagatccttctagaaggtctggcaacatcacttcaacttgtagacccgcttggcaaa
accagccacactgttgggctgacttccaaggatgaccttgtgttcttacgattggtctct
cttcccaagggtcgaaaactcttatctaggttccttcagcttctcttctctggtagtgag
cttgcccgtattgtttgtatggctatttttcgtcatttaaggtttttgtttggcggcctt
caatctgatcccggagcagctgagacaaccactcatcttgcaaagacagtttcctcatgt
gtcaaggtcatggatttacggtccctaagtgcttgtcttgttgcagttgtttgttcttca
gagcagccaccgctgcgcccttttggaagccctgccggtgatggggcctctattattctg
aaatctgtccttgaaagggctactgagctcttaactgatcctcatgctgctgcagttcct
aatcgtgcgctgtggcaagcttcatttgatgaatttttcacgcttcttaccaagtattgc
ctgagtaaatatgaaactatagtgcaatccatatgtttgcagatccagccaagtacagac
gtgattggatctgaggcggtccaagctattagtagggaaatgcctgttgagcttttacgt
gccagtcttcctcacactaatgagctccaacgaaaacttctattagattttggtaaccat
tccatgcccattgctgggttcaatgccagtggggagagtagtggccggataaactcagaa
tcagtgaagggttga
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