Carya illinoinensis (pecan): 122305037
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Entry
122305037 CDS
T08745
Name
(RefSeq) DNA mismatch repair protein MSH7 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122305037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cill03400
]
122305037
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122305037
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
122305037
NCBI-ProteinID:
XP_042973239
LinkDB
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Position
3:48743480..48753074
Genome browser
AA seq
1112 aa
AA seq
DB search
MQRQKSILSFFQKPSSETNGSGAGNAIGCRRVPQFPSKQEKQKGSALNQATNDAAMDSSF
EIRGADTPPEKVPRQVLPVKFATNENDRDSSLFSSIMHKFVKVDDGEKASESKLGDGGFS
NVSTISGRYVEPEGLHKQDMASQRPKRGDVVNSNGIVDQRCALHIEIDDNIPGPETPGMR
PLASRLKRFQEDVAKCRVKNDTSLMDSSKRLKLLQDSTALNKNHTEVSDTMSKFEWLDPA
RIKDAKGRRPGDPLYDKKTLYIPPDALKKMSASQKQYWSVKCQYMDVVLFFKVGKFYELY
ELDAEIGHKELDWKMTFSGVGKCRQVGISESGIDDAVQKLVARGYKVGRIEQLETSDQAK
ARGSNSVIPRKLVQVVTPSTTTDGNIGPDAVHLLAIKEEHSGLDNGSIVYGFAFVDCAAL
KIWVGSIKDDASCAALGALLMQVSPKEVIYESRGLSKGAHKALRKYSLTGPVTLELSPVQ
LITDFLEASEVRNLVQLKGYFKGFSTLWNHVLDSVTHHDIALSALGGLISHLSRLMLDDV
LRNGDILPYQVYRGCLKMDGQTLVNLEIFSNNADGGPSGTLYKYLDNCMTSSGKRLLRNW
ICHPLKDIEDINNRLNVVEDLVAHSEIMSLVAQYLHKLPDLERLLGRVKASVQSSASLLL
PSFGKKVLKQRVKMFGSLVKGLRVGFDLLTLIQNEGHIIKSLAKVCRIPMLSGSDGLDQF
LAQFEAAVDSEFPNYQNHNIIDSDAERLSILIELFIEKATQWVEVIYAINCIDVLRSFGV
TATLSCGAMSRPVFLPQSENMTMGEETGPTLKVKGLWHPFALGENGGLPVPNDIILGKDI
DGYHARTLLLTGPNMGGKSTLLRATCLAVILAQLGCYVPCELCVLSLVDIIFTRLGATDR
IMTGESTFFVECMETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRNLIEKVNCR
LLFATHYHPLTKEFASHPHVTLQHMACTFKSKSDCNSKGDQELVFLYRLTSGACPESYGL
QVATMAGIPEQVVEAASKAGQVMRKSVGESFRSCERRSEFSTLHEEWLKMLMGVSQTGDC
NFDDSDAFDTLFCLWHELKSSYGSHGIYVSSL
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccaaaaatcgatactctcattttttcagaaaccctcgtcggagaccaatggc
tccggtgctggaaatgcgatcggatgccggcgagtaccgcagtttccttctaaacaggag
aagcagaaaggttccgctctcaatcaggccacgaatgatgctgccatggactcgtctttt
gaaatcaggggagccgacacaccgccggagaaggtgccgcggcaggttttgccggtgaag
ttcgccacaaacgagaacgacagagattcttccttgttctcgagtataatgcataagttt
gtgaaggttgatgatggagaaaaggctagcgagagtaagttgggtgatggtggtttctct
aatgtttctacaatatctggtagatatgttgagccggaaggattgcataaacaagatatg
gcttcccaacgtcccaaaaggggtgatgtagtcaattctaacgggatagttgatcaacga
tgcgccttgcatattgaaattgatgacaatattcctgggcctgaaacgcctggtatgaga
cctcttgcttctcgtttgaagcgatttcaagaggatgttgcaaagtgtagggttaagaat
gacacttccttgatggattcgagcaaaaggctgaaactactccaggattcaacagcttta
aacaagaatcatacggaagtatctgatacaatgagcaagtttgagtggcttgaccctgct
cgaatcaaagatgccaagggccgaaggcctggtgatcctctttatgacaagaagacactt
tatataccaccagatgctttgaagaaaatgtcagcatctcagaaacaatattggagtgtc
aaatgtcaatatatggatgttgtgcttttctttaaagtgggaaagttttacgagctttat
gaattagatgctgaaattggccataaggagcttgattggaaaatgacatttagtggtgtg
gggaaatgtcggcaggtcggtatatctgaaagtgggatagatgatgctgttcaaaagctt
gttgctcgtggatataaagttggacgaatagagcagttggagacatctgatcaagcaaaa
gccagaggttcaaattctgtaattccaagaaaattggttcaggtagtcaccccatcaacc
acaactgatggtaatattgggcctgatgctgttcatcttcttgcaataaaagaggagcat
tctggcttggataatggttcgattgtatatggctttgctttcgtggattgtgctgcttta
aaaatttgggttggttcaatcaaggatgatgcgtcctgtgctgcccttggggctttgctg
atgcaggtgtcgccaaaagaagttatatatgagagtagagggctgtccaagggagctcat
aaagcactcagaaagtactcattaacaggtcctgttacactggaattgagtccagtgcag
ctgattacagatttcctggaagcttctgaagttagaaatttggtgcaattgaagggatac
tttaaagggttttctactttgtggaatcatgtccttgatagtgtgacgcaccatgatatt
gccttatctgctcttggtggactaataagtcatctatccaggttgatgttagatgatgtc
ttacggaatggagacatactgccatatcaagtttataggggttgcctcaaaatggatgga
cagacactggtcaatcttgagattttcagtaataatgctgatggtggtccatcaggtact
ttgtacaaatatcttgataattgtatgacatcatctggtaagcggcttttaaggaattgg
atctgccatccgctaaaagatattgaagacattaataataggcttaatgtggttgaagat
ttagttgcacattcagaaattatgtcgcttgttgctcaatatcttcacaagcttcctgat
ttagaaaggttgcttggacgggttaaagctagtgttcagtcatcagcttctctgttactg
ccctcatttggaaaaaaagtattgaaacagcgagttaaaatgtttgggtcacttgtgaaa
ggcctgcgtgttggatttgatctcttaacactaatacagaatgaggggcatataatcaag
tctttagcaaaagtatgtagaattccaatgctaagcggtagtgatgggctggaccaattc
cttgcccaatttgaagcagctgtagatagcgagttcccgaattaccagaatcacaatata
atagattcagatgctgaaagactctccattcttattgagttatttattgaaaaagctact
caatgggttgaagtcatttatgccatcaactgtatcgatgtactaagatcttttggagtc
actgctactttatcatgcggggcaatgtctagacctgtttttttgcctcaatctgaaaat
atgactatgggggaagaaacgggacccacacttaaagttaaagggctatggcatccattt
gcccttggagagaatggaggattgcctgtcccaaatgacattatccttggtaaggatata
gatggttatcatgctcgaactttgctattgactggacctaatatgggtggaaaatcaact
ctcttgcgtgcaacatgtctagctgtcatattggcacagctgggctgctatgtgccctgt
gagttgtgtgttctctcgcttgtggatattatcttcacacggcttggtgctactgatcga
atcatgaccggggagagtaccttcttcgttgagtgcatggaaacagcatcggttcttcaa
aatgcaactcaagattctttggttattcttgatgaactgggtcgaggaacaagcactttt
gatggatacgccattgcatatgcggtatttcgcaatttgatcgaaaaggttaactgccga
ctgctatttgctacacattaccacccacttacaaaggaatttgcttctcatcctcatgtc
accctgcaacacatggcctgcactttcaagtcaaaatcagactgcaattctaaaggtgac
caggagttggtttttctgtaccggctaacctctggagcatgcccagagagctatggattg
caagtggcaacaatggctggaatcccggaacaggtggttgaagctgcatcaaaggctggc
caagtgatgagaaaatcagttggcgaaagtttcaggtcatgtgaacggagatcagagttc
tcgaccctacatgaagagtggttgaagatgctgatgggtgtctctcaaaccggagattgt
aattttgacgacagcgatgcttttgatacgctgttttgcttgtggcatgagctaaagagc
tcatatggatcgcatggaatttatgtgtcgagtctgtaa
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