Carya illinoinensis (pecan): 122305122
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Entry
122305122 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122305122
03041 Spliceosome [BR:
cill03041
]
122305122
03036 Chromosome and associated proteins [BR:
cill03036
]
122305122
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122305122
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122305122
mRNA cycle factors
Common to processing body (P body) and stress granule
122305122
Spliceosome [BR:
cill03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122305122
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122305122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF5320
Motif
Other DBs
NCBI-GeneID:
122305122
NCBI-ProteinID:
XP_042973385
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Position
3:50220377..50225993
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AA seq
617 aa
AA seq
DB search
MTWSDARNDSTPKPTRPARLTYIPPHLRKKCVPVPNYNAYSLPTESTHLEFRNGRGRGRG
RGRGRGRGRLYQTERWNQNQTQAPFDISFKFNELDVNDDEANTESESMNLEAYEDIPVEA
SGSDIPAPVNTFAEIDLGEGLNQNIKRCNYVKPTPIQRHAIPIVMAGRDLMACAQTGSGK
TAAFCFPIISGILNQNHFTRPNRVACPVALILSPTRELSCQIHDEAKKFAYQTGVKISVT
YGGAPISQQFRNLERGVDILVATPGRLVDMIERSRVSLRAIKYLALDEADRMLDMGFEPQ
IRKIVKEMDMPPCSERQTMFFSATFPSEIQRLASDFLSNYIFVAVGRVGSSTDLISQRVE
FVHDVDKRNHLINLLQGQRANGTHSKNALTLVFVETKRGADALENWLSMKGFPAIAIHGD
KVQMERERALKSFRSGSTPILVATDVASRGLDVPHVAHVINFDLPKDIDDYVHRIGRTGR
AGNSGLATAFFTEKNLPLAKALVELMQEAKQEVPLWLSDYAKRASNVGGSGRINRFGGNK
FGGYDFRRDAQSESENDYHSSTCGNAAASSYALSHAVATSNDYAAANSYANTGVDSYTSG
SYGYGHNFSSGGASGWH
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgacatggtctgacgctagaaacgattcaactccgaagccaactcgcccggctcgactc
acctacatccctccgcacctgaggaaaaaatgtgtccccgtacccaactacaacgcgtac
agcttacccacggagtcaactcacctcgagtttcgaaacggtcggggtcgcggccgaggc
cgtggccgtggtcgtggtcgtggtcgcttataccagaccgagcgctggaaccagaaccaa
acacaagccccttttgatatctctttcaaattcaacgagctggatgtcaatgacgacgag
gccaacactgagtcagagtcgatgaatttggaggcgtacgaggacattccggtggaggcc
agtggctctgatattcctgcaccggtcaacacattcgcggaaattgacttgggtgagggt
ctaaaccagaatatcaagcggtgtaactacgtgaagcccactccgattcagcgccacgcc
attcccattgtcatggccgggcgcgacctaatggcctgtgcccaaactgggtctggcaaa
accgctgcgttttgcttcccaatcatctctgggattctgaatcaaaaccattttacgagg
ccgaatcgagtcgcgtgtccggttgcgcttatcctgtccccgactagggagttgtcttgt
cagatacatgatgaggctaagaagtttgcgtatcagactggggtcaagatctctgttacg
tatggtggggctccaatttctcaacagttccgaaacttggaaagaggcgtcgacatcttg
gtggctacaccagggcgattagtggatatgattgaaagatcaagagtttcacttagggca
ataaaatacttggcattagatgaggctgatcgaatgctggacatgggctttgagccccaa
atccggaagattgtcaaggaaatggacatgcctccatgcagcgaaagacagacaatgttt
ttcagtgctacattcccaagtgagatacagagacttgcatcggattttctttcaaactac
atatttgtggcagttggaagagttggttctagcactgatcttatttctcaaagagtcgaa
tttgttcatgacgtggataaaagaaaccatcttatcaaccttctacaaggccagagggcg
aatggaacccatagcaagaatgctttgaccttagtatttgtggagacaaagagaggagca
gatgcattagaaaactggttgtccatgaaaggttttccagcaatcgcaattcatggtgac
aaagtgcaaatggagagagaacgagctttgaaatctttcagaagtggttccactccaatt
ttggtggcaacagatgttgcttcacgaggtttggacgtcccacatgtcgcacatgtcatc
aattttgacttgccaaaagacatagatgactatgtccacaggattgggagaacaggtcgt
gctggtaattccggtctggcaactgcatttttcactgagaagaacctgcctcttgcaaag
gcacttgttgaactcatgcaggaagcaaagcaggaagttcctctttggcttagtgattat
gctaagagagcatctaatgttggtggtagcggtcgaatcaaccgatttgggggcaacaag
tttggtggctatgacttccgaagagatgctcaatctgagagtgagaatgattaccattca
agcacttgtggcaatgctgcagcttcctcttatgctctttctcatgctgttgcaaccagt
aatgattatgctgctgctaattcctatgccaacaccggtgttgattcttatacttcgggt
tcgtatggatacggacataatttttcatctggtggcgccagtggttggcactag
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